http://pastdb.crg.eu/w/api.php?action=feedcontributions&feedformat=atom&user=WikiSysop
PastDB - User contributions [en]
2026-04-20T11:18:51Z
User contributions
MediaWiki 1.27.7
http://pastdb.crg.eu/w/index.php?title=Template:GeneEvents_Parse2&diff=445
Template:GeneEvents Parse2
2021-03-23T17:57:09Z
<p>WikiSysop: </p>
<hr />
<div><includeonly><div class="trow"><div><span class="title">[{{SERVER}}/event/{{{eventfunction_by_gene.EventID}}}@{{{eventfunction_by_gene.Ass}}} {{{eventfunction_by_gene.EventID}}}]</span></div><div> {{TypeEvent|{{{eventfunction_by_gene.EventID}}}}} </div><div> <span>{{{eventfunction_by_gene.Length_N|0}}}</span></div><div> <span>{{{eventfunction_by_gene.CO_A}}}</span></div><div> <span>{{{eventfunction_by_gene.Strand}}}</span> </div><div> <span>{{{eventfunction_by_gene.Avg|0}}}</span> </div><div> <span>{{{eventfunction_by_gene.Range|0}}}</span> </div><div> <span>{{{eventfunction_by_gene.NumFunctions|0}}}</span></div></div></includeonly></div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Template:GeneEvents_Parse&diff=422
Template:GeneEvents Parse
2020-07-14T15:11:25Z
<p>WikiSysop: </p>
<hr />
<div><includeonly><tr><br />
<td><span class="title">[{{SERVER}}/event/{{{eventfunction_by_gene.EventID}}}@{{{eventfunction_by_gene.Ass}}} {{{eventfunction_by_gene.EventID}}}]</span></td><br />
<td>{{TypeEvent|{{{eventfunction_by_gene.EventID}}}}} </td><td> <span>{{{eventfunction_by_gene.Length_N|0}}}</span></td><br />
<td><span>{{{eventfunction_by_gene.Chro}}}:{{{eventfunction_by_gene.Start}}}-{{{eventfunction_by_gene.End}}}</span></td><br />
<td><span>{{{eventfunction_by_gene.Strand}}}</span> </td><td> <span>{{{eventfunction_by_gene.Avg|0}}}</span></td><br />
<td><span>{{{eventfunction_by_gene.Range|0}}}</span> </td><td> <span>{{{eventfunction_by_gene.NumFunctions|0}}}</span></td></tr></includeonly></div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Coordinates&diff=421
Coordinates
2020-07-14T14:53:00Z
<p>WikiSysop: </p>
<hr />
<div>{{#vardefine:limit|50}}{{#vardefine:offset|{{#expr:({{#urlget:offset|1}}-1)*{{#var:limit}} }} }}{{#vardefine:coords|{{#ifeq:{{#urlget:coords}}|||{{#urldecode:{{#urlget:coords}}}}}}}}{{#vardefine:genome|{{#urldecode:{{#urlget:genome|araTha10}}}}}}<br />
<div id="browse-coords"><br />
{{#embedUCSC:coords={{#var:coords|}}|genome_id={{#var:genome|}}}}<br />
{{#CouchDB_Query_field:tag=select|query=AND genome:$1 AND class:Event|values=araTha10|id=genome-select|default={{#var:genome}}}}<br />
{{#CouchDB_Query_field:tag=input|type=hidden|query=&sort=start|id=result-sort}}<br />
{{#CouchDB_Query_table:type=couchdb-lucene-query|full=true|index=coords|db={{#getCouchDBinstance:}}|query=javascript:coordinates|text={{#urldecode:{{#urlget:coords|}}}}|header=Id,Assembly,Chromosome,Start,End,Avg,Range|fields=#id,#genome,chro,start,end,avg,range|prefixurl=id:/event/,genome:/assembly/|extra=#genome-select,#result-sort}}<br />
</div></div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Samples&diff=420
Samples
2020-07-09T09:23:10Z
<p>WikiSysop: </p>
<hr />
<div>{{#BioDB:tissues_pastdb|araTha10}}<br />
{{#BioDB_table_template:Template:Tissues_List|header=Template:Tissues_List_Header|footer=Template:FilterEventList_Footer}}</div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Template:Tissues_List&diff=419
Template:Tissues List
2020-07-09T09:22:52Z
<p>WikiSysop: </p>
<hr />
<div><includeonly><tr><td>{{#showRcolor:{{{tissues_pastdb.Rcolor}}}}}&nbsp;<span class="title">{{#alink:href={{SERVER}}/tissue/{{{tissues_pastdb.SampleID}}}@{{{tissues_pastdb.Ass}}}|{{{tissues_pastdb.SampleID}}}}} </span></td><td> <span> {{{tissues_pastdb.Group}}}</span></td><td> <span>{{{tissues_pastdb.Subgroup}}}</span></td><td> <span>{{#alink:href={{SERVER}}/assembly/{{{tissues_pastdb.Ass}}}|{{{tissues_pastdb.Ass}}}}}</span> </td></tr></includeonly></div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Template:Tissues_List_Header&diff=418
Template:Tissues List Header
2020-07-09T09:21:42Z
<p>WikiSysop: </p>
<hr />
<div><includeonly><!-- We assume the same name in different organisms, this should be changed maybe --><br />
<table class="wikitable sortable tissue-list"><tr><br />
<th>Sample</th><th>Group</th><th>Subgroup</th><th>Assembly</th><br />
</tr><br />
</includeonly></div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Template:Gene2&diff=417
Template:Gene2
2020-07-09T09:16:25Z
<p>WikiSysop: </p>
<hr />
<div><includeonly>{{#vardefine:id|{{#cleanTag:{{{1}}}|at|pre}}}}{{#vardefine:genome|{{#cleanTag:{{{1}}}|pre}}}}{{BioDB_gene|{{#var:id}}|{{#var:genome}}}}<span id="molid" data-molid="{{{1}}}"></span><nowiki />__NOTOC__<nowiki />{{DISPLAYTITLE:{{#var:id}}}}{{#CustomMsg:Help:Gene.ini|ini}}<nowiki /><div class="tablebox" id="gene"><br />
<div class="row"><br />
<div class="label">Biotype</div><br />
<div class="content">{{#var:type|}}</div><br />
</div><br />
<div class="row"><br />
<div class="label">Gene Symbol</div><br />
<div class="content">''{{#var:name|}}''</div><br />
</div><br />
<div class="row"><br />
<div class="label">Description</div><br />
<div class="content">{{#var:desc|}}</div><br />
</div><br />
<div class="row"><br />
<div class="label">Coordinates</div>{{#vardefine:ref_id|Chromosome:{{#var:chro|}}@Genome:{{#var:genome}}}}<br />
<div class="content">{{#var:chro|}}:{{#var:start|}}-{{#var:end|}}:{{#var:strand|}}{{HelpLinkedPage2|type=helpicon|msg=gene-coords|output=data-tooltip}}</div><br />
</div><br />
<div class="row"><br />
<div class="label">Assembly</div><br />
<div class="content">[{{SERVER}}/assembly/{{#var:genome|}} {{#var:genome|}}]</div><br />
</div>{{Gene Other Assemblies|{{#var:id|}}|{{#var:genome|}}}}<br />
</div><br />
<br />
==== GENOMIC BROWSER ====<br />
<div style="float:right">{{HelpLinkedPage2|type=helpicon|msg=gene-browser|output=data-tooltip}}</div><br />
{{#embedUCSC:chrom={{#var:ref_id|}}|start={{#var:start|}}|end={{#var:end|}}|genome_id={{#var:genome|}}}}<br />
<hr><br />
==== EXPRESSION VALUES ====<br />
<div style="float:right">{{HelpLinkedPage2|type=helpicon|msg=gene-expression|output=data-tooltip}}</div><br />
<div class="expressionvalue-list sample-chart"></div>{{#printCharts:}}<br />
<hr><br />
{{#specialImages:{{#var:id|}}|{{#var:genome|}}|GE_TCGA,GE_GTEX,GE_ASD_UCLA,GE_EARLY_DEV,GE_HEMATO_PREC,GE_MYOBLAST,GE_NEU_DIF,GE_SPERMATOG,GE_REPROGR_CARSTENS,GE_EARLY_DEV_MMU,GE_VICKY,GE_PANCREAS,GE_ABIOTIC,GE_BIOTIC,GE_LIGHT,GE_SPL_FACTORS|The Cancer Genome Atlas (TCGA),Genotype-Tissue Expression Project (GTEx),Autistic and control brains,Early development data (Chris),Hematopoietic precursors and cell types,Muscular differentiation time course,Neural differentiation time course,Spermatogenesis cell types,Reprogramming of fibroblasts to iPSCs,Early development data (Chris),Naive versus primed pluripotent ESCs (Vicky),Pancreas cell types,Abiotic stress,Biotic stress,Light response,Splicing factor regulation|{{HelpLinkedPage2|type=helpicon|msg=gene-specialdataset-tcga|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=gene-specialdataset-gtex|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=gene-specialdataset-asducla|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=gene-specialdataset-earlydevhsa|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=gene-specialdataset-hemato|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=gene-specialdataset-myoblast|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=gene-specialdataset-neudif|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=gene-specialdataset-spermatogenesis|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=gene-specialdataset-reprogr_carstens|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=gene-specialdataset-earlydevmmu|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=gene-specialdataset-vicky|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=gene-specialdataset-pancreas|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=gene-specialdataset-abiotic|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=gene-specialdataset-biotic|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=gene-specialdataset-light|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=gene-specialdataset-spl_factors|output=data-tooltip}}|span}}<br />
<br />
{{GeneEvents|{{#var:id|}}|{{#var:genome|}}}}<br />
{{HomologyList2|{{#var:id|}}|{{#var:genome|}}}}<br />
[[Category:Genes]][[Category:Genes in Genome:{{#var:genome|}}]]<nowiki /></includeonly></div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Template:GeneEvents&diff=416
Template:GeneEvents
2020-07-09T09:16:12Z
<p>WikiSysop: </p>
<hr />
<div><includeonly>{{#BioDB:eventfunction_by_gene|{{{1|}}},{{{2|}}}}}{{#ifexpr:{{#BioDB_count:eventfunction_by_gene.EventID}}>0|<br />
==== EVENTS AND AS PROFILES ==== <br />
<div style="float:right">{{HelpLinkedPage2|type=helpicon|msg=gene-associatedevents|output=data-tooltip}}</div><br />
<div class="multivalue-list sample-chart"><br />
==== Associated events ==== <br />
<div class='children'><br />
<div class="tbody">{{#BioDB_table_template:Template:GeneEvents_Parse|header=Template:FilterEventList_Header|footer=Template:FilterEventList_Footer}}</div><br />
</div></div>}}<br style="clear:both" /></includeonly></div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Template:GeneEvents_Parse&diff=415
Template:GeneEvents Parse
2020-07-09T09:15:40Z
<p>WikiSysop: </p>
<hr />
<div><includeonly><tr><br />
<td><span class="title">[{{SERVER}}/event/{{{eventfunction_by_gene.EventID}}}@{{{eventfunction_by_gene.Ass}}} {{{eventfunction_by_gene.EventID}}}]</span></td><br />
<td>{{TypeEvent|{{{eventfunction_by_gene.EventID}}}}} </td><td> <span>{{{eventfunction_by_gene.Length_O|0}}}</span></td><br />
<td><span>{{{eventfunction_by_gene.Chro}}}:{{{eventfunction_by_gene.Start}}}-{{{eventfunction_by_gene.End}}}</span></td><br />
<td><span>{{{eventfunction_by_gene.Strand}}}</span> </td><td> <span>{{{eventfunction_by_gene.Avg|0}}}</span></td><br />
<td><span>{{{eventfunction_by_gene.Range|0}}}</span> </td><td> <span>{{{eventfunction_by_gene.NumFunctions|0}}}</span></td></tr></includeonly></div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Template:FilterEventList_Header&diff=414
Template:FilterEventList Header
2020-07-09T09:14:58Z
<p>WikiSysop: </p>
<hr />
<div><includeonly><table class="wikitable sortable multitable"><br />
<tr><br />
<th>Event</th><th>Type</th><th>Length</th><th>Coordinates</th><th>Strand</th><th>PSI Average</th><th>PSI Range</th><th>Annotated Functions</th><br />
</tr><br />
</includeonly></div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Template:FilterEventList_Footer&diff=413
Template:FilterEventList Footer
2020-07-09T09:14:35Z
<p>WikiSysop: </p>
<hr />
<div><includeonly><br />
</table><br />
</includeonly></div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Template:Event2&diff=412
Template:Event2
2020-07-06T16:24:58Z
<p>WikiSysop: </p>
<hr />
<div><includeonly>__NOTOC__{{#vardefine:id|{{#cleanTag:{{{1}}}|at|pre}}}}{{#vardefine:genome|{{#cleanTag:{{{1}}}|pre}}}}{{BioDB_oldid|{{#var:id|}}|{{#var:genome|}}}}{{#vardefine:sub|{{#rmatch:{{#var:id}}|(\D+\d{4})|$1}}}}<nowiki />{{DISPLAYTITLE:{{#var:id|}}}}{{#CustomMsg:Help:Event.ini|ini}}<nowiki /><span id="molid" data-molid="{{{1}}}"></span><nowiki /><br />
''{{TypeEvent|{{PAGENAME}}}}''<nowiki />{{BioDB_event|{{#var:id|}}|{{#var:genome|}}}}<nowiki /><br />
{{BioDB_event_metrics|{{#var:id}}}}<nowiki /><br />
<div class="tablebox event-assembly"><br />
<div class="row"><div class="label small-6 large-4 columns">Gene</div><div class="content small-6 large-8 columns">{{#ifeq:{{#var:gene_id|}}||NA|[{{SERVER}}/gene/{{#var:gene_id|}}@{{#var:genome|}} {{#var:gene_id|}}]<br />
}}{{#ifeq:{{#var:gene_name|}}|||&nbsp;{{!}} ''{{#var:gene_name|}}'' }}</div></div><br />
<div class="row"><div class="label small-6 large-4 columns">Description</div><div class="content small-6 large-8 columns">{{#if:{{#var:description|}}|{{#var:description|}}|NA}}</div></div><br />
<div class="row"><div class="label small-6 large-4 columns">Coordinates</div><br />
<div class="content small-6 large-8 columns"><br />
<div class="block"><br />
<div class="head"><span class='genome-nor'>{{#var:chro_c|}}:{{#var:start_c|}}-{{#var:end_c|}}:{{#var:strand_c|}}</span>{{HelpLinkedPage2|type=helpicon|msg=event-coords|output=data-tooltip}}<span class="unfold up"></span></div><br />
<div class="body"><br />
<div class="rowin"><div class="labelin">Coord C1 exon</div><div class="contentin">{{#var:co_c1|}}</div></div><br />
<div class="rowin"><div class="labelin">Coord A exon</div><div class="contentin">{{#var:co_a|}}</div></div><br />
<div class="rowin"><div class="labelin">Coord C2 exon</div><div class="contentin">{{#var:co_c2|}}</div></div><br />
</div><br />
</div><br />
<br />
</div><br />
</div><br />
<div class="row"><div class="label small-6 large-4 columns">Length</div><div class="content small-6 large=8 columns">{{#var:length_n|}} bp{{HelpLinkedPage2|type=helpicon|msg=event-length|output=data-tooltip}}</div></div><br />
<div class="row"><div class="label small-6 large-4 columns">Sequences</div><br />
<div class="content small-6 large-8 columns"><br />
<div class="block"><br />
<div class="head"><span>Splice sites</span>{{HelpLinkedPage2|type=helpicon|msg=event-splice|output=data-tooltip}}<span class="unfold up"></span></div><br />
<div class="body"><br />
{{Score_SS|{{#var:id|}}|{{#var:genome|}}}}<br />
</div><br />
</div><br />
<div class="block"><br />
<div class="head"><span>Exon sequences</span>{{HelpLinkedPage2|type=helpicon|msg=event-exon|output=data-tooltip}}<span class="unfold down"></span></div><br />
<div class="body folded"><br />
<div class="rowin"><div class="labelin">Seq C1 exon</div>{{#var:seq_c1|}}</div><br />
<div class="rowin"><div class="labelin">Seq A exon</div>{{#var:seq_a|}}</div><br />
<div class="rowin"><div class="labelin">Seq C2 exon</div>{{#var:seq_c2|}}</div><br />
</div><br />
</div> <br />
</div><br />
</div><br />
<div class="row"><div class="label small-6 large-4 columns">VastDB Features</div>{{BioDB_mappability|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="content small-6 large-8 columns"><br />
<div class="block"><br />
<div class="head"><span>Vast-tools module Information</span>{{HelpLinkedPage2|type=helpicon|msg=event-vastdbfeatures|output=data-tooltip}}<span class="unfold down"></span></div><br />
<div class="body folded"><br />
<div class="rowin"><div class="labelin">Secondary ID</div><div class="contentin">{{#var:oldid|}}</div>{{HelpLinkedPage2|type=helpicon|msg=event-internal|output=data-tooltip}}</div><br />
<div class="rowin"><div class="labelin">Average complexity</div><div class="contentin">{{#var:complex|}}</div>{{HelpLinkedPage2|type=helpicon|msg=event-complexity|output=data-tooltip}}</div><br />
<div class="rowin"><div class="labelin">Mappability confidence:</div><div class="contentin">{{#ifeq:{{#var:minc|}}||NA|{{#var:minc|}}%={{#var:mexc1|}}={{#var:mexc2|}}%}}</div>{{HelpLinkedPage2|type=helpicon|msg=event-mappability|output=data-tooltip}}</div><br />
</div><br />
</div><br />
</div><br />
</div><br />
<div class="row"><div class="label small-6 large-4 columns">Protein Impact</div>{{BioDB_protimpact|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="content small-6 large-8 columns"><br />
<div class="">{{#var:protimpact|No protein impact description available}}{{HelpLinkedPage2|type=helpicon|msg=event-impact|output=data-tooltip}}<br />
</div>{{BioDB_protdisorder|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="block protimpact"><br />
<div class="head"><span>Features</span><br />
<span class="unfold up"></span></div><br />
<div class="body"><br />
<div class="rowin"><div class="labelin">Disorder rate (disopred):</div><div class="contentin">&nbsp;&nbsp;<span class="colorc1">C1</span>={{#var:c1dis|NA}} <span class="colora">A</span>={{#var:adis|NA}} <span class="colorc2">C2</span>={{#var:c2dis|NA}}</div> <br />
</div>{{HelpLinkedPage2|type=helpicon|msg=event-disorder|output=data-tooltip}}<br />
<div class="rowin"><div class="labelin">Domain overlap (PFAM):</div><div class="contentin">{{HelpLinkedPage2|type=helpicon|msg=event-pfam|output=data-tooltip}}<br />
<div class="block">{{BioDB_pfam|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="body"><br />
<div class="rowin"><div class="labelin colorc1">C1:</div><div class="contentin">{{#var:c1pfam|NA}}</div></div><br />
<div class="rowin"><div class="labelin colora">A:</div><div class="contentin">{{#var:apfam|NA}}</div></div><br />
<div class="rowin"><div class="labelin colorc2">C2:</div><div class="contentin">{{#var:c2pfam|NA}}</div></div><br />
</div><br />
</div><br />
</div></div><br />
<div class="rowin">{{#vardefine:isoid|{{#replace:{{#var:id}}|/|_}}}}<br />
{{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Incl_main}}<br />
<div class="labelin">Main Inclusion Isoform:</div><div class="contentin isoforms">{{#var:isoformid}}</div><br />
</div><br />
<div class="rowin"><br />
<div class="contentin domainimg">{{#ifeq:{{#vastDBFileExists:domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-INC.png}}|1|{{ExternalImgURL|{{SERVER}}/domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-INC.png|{{#var:isoid}}-INC}}}}</div> <br />
</div><br />
<div class="rowin"><br />
{{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Excl_main}}<br />
<div class="labelin">Main Skipping Isoform:</div><div class="contentin isoforms">{{#var:isoformid}}</div><br />
</div><br />
<div class="rowin"><br />
<div class="contentin domainimg">{{#ifeq:{{#vastDBFileExists:domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-EXC.png}}|1|{{ExternalImgURL|{{SERVER}}/domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-EXC.png|{{#var:isoid}}-EXC}}}}</div> <br />
</div><br />
<div class="rowin"><br />
{{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Incl_other}}<br />
<div class="labelin">Other Inclusion Isoforms:</div><div class="contentin isoforms">{{#var:isoformid}}</div> <br />
</div><br />
<div class="rowin"><br />
{{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Excl_other}}<br />
<div class="labelin">Other Skipping Isoforms:</div><div class="contentin isoforms">{{#var:isoformid}}</div> <br />
</div></div></div></div></div><br />
<div class="row"><div class="label small-6 large-4 columns">Associated events</div><div class="content small-6 large-8 columns">{{Associated2|{{#var:id|}}|{{#var:genome|}}}}{{HelpLinkedPage2|type=helpicon|msg=event-associated|output=data-tooltip}}</div><br />
</div>{{Event Other Assemblies|{{#var:id|}}|{{#var:genome|}}}}{{BioDB primer|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="row"><div class="label small-6 large-4 columns">Primers PCR</div><br />
<div class="content small-6 large-8 columns"><br />
<div class="block"><br />
<div class="head"><span>Suggestions for RT-PCR validation</span>{{HelpLinkedPage2|type=helpicon|msg=event-primers|output=data-tooltip}}<span class="unfold down"></span></div><br />
<div class="body folded"><br />
<div class="rowin"><div class="labelin">F: </div>{{#ifeq:{{#var:primerf|}}||<div class="contentin">No suggested primer sequences</div>|<div class="contentin bioseq">{{#var:primerf|}}</div>}}</div><br />
<div class="rowin"><div class="labelin">R: </div>{{#ifeq:{{#var:primerr|}}||<div class="contentin">No suggested primer sequences</div>|<div class="contentin bioseq">{{#var:primerr|}}</div>}}</div><br />
<div class="rowin"><div class="labelin">Band lengths: </div><div class="contentin">{{#ifeq:{{#var:pskipping|}}|||{{#var:pskipping|}}-{{#var:pinclusion|}}}}</div></div><br />
</div><br />
</div><br />
</div><br />
</div><br />
<div class="row"><br />
<div class="label small-6 large-4 columns">Annotated function<div class="submitfunction">[[EventFunction|(Submit a function)]]</div></div><br />
<div class="content small-6 large-8 columns">{{AnnotatedFunction|{{#var:id|}}|{{#var:genome|}}}}</div> <br />
</div><br />
</div><br />
<br /><br />
====GENOMIC CONTEXT====<br />
<div class="content large-12"><br />
<div style="float:right">{{HelpLinkedPage2|type=helpicon|msg=event-browser|output=data-tooltip}}</div><br />
</div><br />
<div class="browser-container genome-nor"><br />
{{#embedUCSC:chrom={{#var:chro_c|}}|start={{#var:start_c|}}|end={{#var:end_c|}}|genome_id={{#var:genome|}}}}</div><br />
====INCLUSION PATTERN====<br />
<div class="tissuevalue-list sample-chart">{{HelpLinkedPage2|type=helpicon|msg=event-tissuevalue|output=data-tooltip}}</div>{{#printCharts:}}<br />
<hr><br />
{{#specialImages:{{#var:id|}}|{{#var:genome|}}|AS_TCGA,AS_GTEX,AS_ASD_UCLA,AS_EARLY_DEV,AS_HEMATO_PREC,AS_MYOBLAST,AS_NEU_DIF,AS_SPERMATOG,AS_REPROGR_CARSTENS,AS_EARLY_DEV_MMU,AS_VICKY,AS_PANCREAS,AS_ABIOTIC,AS_BIOTIC,AS_LIGHT,AS_SPL_FACTORS|The Cancer Genome Atlas (TCGA),Genotype-Tissue Expression Project (GTEx),Autistic and control brains,Early development data (Chris),Hematopoietic precursors and cell types,Muscular differentiation time course,Neural differentiation time course,Spermatogenesis cell types,Reprogramming of fibroblasts to iPSCs,Early development data (Chris),Naive to Primed (Vicky),Pancreas cell types,Abiotic stress,Biotic stress,Light response,Splicing factor regulation|{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-tcga|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-gtex|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-asducla|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-earlydevhsa|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-hemato|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-myoblast|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-neudif|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-spermatogenesis|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-reprogr_carstens|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-earlydevmmu|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-vicky|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-pancreas|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-abiotic|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-biotic|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-light|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-spl_factors|output=data-tooltip}}}}<br />
<!--{{SpecialPSIDiv}}--><br />
{{Event Links|{{#var:genome}}|{{#var:gene_id}}|{{#var:gene_name}}}}<br />
{{PDBdiv|{{#var:genome|}}}}[[Category:Events]][[Category:Events in Genome:{{#var:genome|}}]]<nowiki /></includeonly></div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Coordinates&diff=411
Coordinates
2020-07-06T15:38:10Z
<p>WikiSysop: </p>
<hr />
<div>{{#vardefine:limit|50}}{{#vardefine:offset|{{#expr:({{#urlget:offset|1}}-1)*{{#var:limit}} }} }}{{#vardefine:coords|{{#ifeq:{{#urlget:coords}}|||{{#urldecode:{{#urlget:coords}}}}}}}}{{#vardefine:genome|{{#urldecode:{{#urlget:genome|hg38}}}}}}<br />
<div id="browse-coords"><br />
{{#embedUCSC:coords={{#var:coords|}}|genome_id={{#var:genome|}}}}<br />
{{#CouchDB_Query_field:tag=select|query=AND genome:$1 AND class:Event|values=araTha10|id=genome-select|default={{#var:genome}}}}<br />
{{#CouchDB_Query_field:tag=input|type=hidden|query=&sort=start|id=result-sort}}<br />
{{#CouchDB_Query_table:type=couchdb-lucene-query|full=true|index=coords|db={{#getCouchDBinstance:}}|query=javascript:coordinates|text={{#urldecode:{{#urlget:coords|}}}}|header=Id,Assembly,Chromosome,Start,End,Avg,Range|fields=#id,#genome,chro,start,end,avg,range|prefixurl=id:/event/,genome:/assembly/|extra=#genome-select,#result-sort}}<br />
</div></div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Template:Event2&diff=410
Template:Event2
2020-07-06T11:38:58Z
<p>WikiSysop: </p>
<hr />
<div><includeonly>__NOTOC__{{#vardefine:id|{{#cleanTag:{{{1}}}|at|pre}}}}{{#vardefine:genome|{{#cleanTag:{{{1}}}|pre}}}}{{BioDB_oldid|{{#var:id|}}|{{#var:genome|}}}}{{#vardefine:sub|{{#rmatch:{{#var:id}}|(\D+\d{4})|$1}}}}<nowiki />{{DISPLAYTITLE:{{#var:id|}}}}{{#CustomMsg:Help:Event.ini|ini}}<nowiki /><span id="molid" data-molid="{{{1}}}"></span><nowiki /><br />
''{{TypeEvent|{{PAGENAME}}}}''<nowiki />{{BioDB_event|{{#var:id|}}|{{#var:genome|}}}}<nowiki /><br />
{{BioDB_event_metrics|{{#var:id}}}}<nowiki /><br />
<div class="tablebox event-assembly"><br />
<div class="row"><div class="label small-6 large-4 columns">Gene</div><div class="content small-6 large-8 columns">{{#ifeq:{{#var:gene_id|}}||NA|[{{SERVER}}/gene/{{#var:gene_id|}}@{{#var:genome|}} {{#var:gene_id|}}]<br />
}}{{#ifeq:{{#var:gene_name|}}|||&nbsp;{{!}} ''{{#var:gene_name|}}'' }}</div></div><br />
<div class="row"><div class="label small-6 large-4 columns">Description</div><div class="content small-6 large-8 columns">{{#if:{{#var:description|}}|{{#var:description|}}|NA}}</div></div><br />
<div class="row"><div class="label small-6 large-4 columns">Coordinates</div><br />
<div class="content small-6 large-8 columns"><br />
<div class="block"><br />
<div class="head"><span class='genome-nor'>{{#var:chro_c|}}:{{#var:start_c|}}-{{#var:end_c|}}:{{#var:strand_c|}}</span>{{HelpLinkedPage2|type=helpicon|msg=event-coords|output=data-tooltip}}<span class="unfold up"></span></div><br />
<div class="body"><br />
<div class="rowin"><div class="labelin">Coord C1 exon</div><div class="contentin">{{#var:co_c1|}}</div></div><br />
<div class="rowin"><div class="labelin">Coord A exon</div><div class="contentin">{{#var:co_a|}}</div></div><br />
<div class="rowin"><div class="labelin">Coord C2 exon</div><div class="contentin">{{#var:co_c2|}}</div></div><br />
</div><br />
</div><br />
<br />
</div><br />
</div><br />
<div class="row"><div class="label small-6 large-4 columns">Length</div><div class="content small-6 large=8 columns">{{#var:length_n|}} bp{{HelpLinkedPage2|type=helpicon|msg=event-length|output=data-tooltip}}</div></div><br />
<div class="row"><div class="label small-6 large-4 columns">Sequences</div><br />
<div class="content small-6 large-8 columns"><br />
<div class="block"><br />
<div class="head"><span>Splice sites</span>{{HelpLinkedPage2|type=helpicon|msg=event-splice|output=data-tooltip}}<span class="unfold up"></span></div><br />
<div class="body"><br />
{{Score_SS|{{#var:id|}}|{{#var:genome|}}}}<br />
</div><br />
</div><br />
<div class="block"><br />
<div class="head"><span>Exon sequences</span>{{HelpLinkedPage2|type=helpicon|msg=event-exon|output=data-tooltip}}<span class="unfold down"></span></div><br />
<div class="body folded"><br />
<div class="rowin"><div class="labelin">Seq C1 exon</div>{{#var:seq_c1|}}</div><br />
<div class="rowin"><div class="labelin">Seq A exon</div>{{#var:seq_a|}}</div><br />
<div class="rowin"><div class="labelin">Seq C2 exon</div>{{#var:seq_c2|}}</div><br />
</div><br />
</div> <br />
</div><br />
</div><br />
<div class="row"><div class="label small-6 large-4 columns">VastDB Features</div>{{BioDB_mappability|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="content small-6 large-8 columns"><br />
<div class="block"><br />
<div class="head"><span>Vast-tools module Information</span>{{HelpLinkedPage2|type=helpicon|msg=event-vastdbfeatures|output=data-tooltip}}<span class="unfold down"></span></div><br />
<div class="body folded"><br />
<div class="rowin"><div class="labelin">Secondary ID</div><div class="contentin">{{#var:oldid|}}</div>{{HelpLinkedPage2|type=helpicon|msg=event-internal|output=data-tooltip}}</div><br />
<div class="rowin"><div class="labelin">Average complexity</div><div class="contentin">{{#var:complex|}}</div>{{HelpLinkedPage2|type=helpicon|msg=event-complexity|output=data-tooltip}}</div><br />
<div class="rowin"><div class="labelin">Mappability confidence:</div><div class="contentin">{{#ifeq:{{#var:minc|}}||NA|{{#var:minc|}}%={{#var:mexc1|}}={{#var:mexc2|}}%}}</div>{{HelpLinkedPage2|type=helpicon|msg=event-mappability|output=data-tooltip}}</div><br />
</div><br />
</div><br />
</div><br />
</div><br />
<div class="row"><div class="label small-6 large-4 columns">Protein Impact</div>{{BioDB_protimpact|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="content small-6 large-8 columns"><br />
<div class="">{{#var:protimpact|No protein impact description available}}{{HelpLinkedPage2|type=helpicon|msg=event-impact|output=data-tooltip}}<br />
</div>{{BioDB_protdisorder|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="block protimpact"><br />
<div class="head"><span>Features</span><br />
<span class="unfold up"></span></div><br />
<div class="body"><br />
<div class="rowin"><div class="labelin">Disorder rate (disopred):</div><div class="contentin">&nbsp;&nbsp;<span class="colorc1">C1</span>={{#var:c1dis|NA}} <span class="colora">A={{#var:adis|NA}}</span> <span class="colorc2">C2</span>={{#var:c2dis|NA}}</div> <br />
</div>{{HelpLinkedPage2|type=helpicon|msg=event-disorder|output=data-tooltip}}<br />
<div class="rowin"><div class="labelin">Domain overlap (PFAM):</div><div class="contentin">{{HelpLinkedPage2|type=helpicon|msg=event-pfam|output=data-tooltip}}<br />
<div class="block">{{BioDB_pfam|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="body"><br />
<div class="rowin"><div class="labelin colorc1">C1:</div><div class="contentin">{{#var:c1pfam|NA}}</div></div><br />
<div class="rowin"><div class="labelin colora">A:</div><div class="contentin">{{#var:apfam|NA}}</div></div><br />
<div class="rowin"><div class="labelin colorc2">C2:</div><div class="contentin">{{#var:c2pfam|NA}}</div></div><br />
</div><br />
</div><br />
</div></div><br />
<div class="rowin">{{#vardefine:isoid|{{#replace:{{#var:id}}|/|_}}}}<br />
{{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Incl_main}}<br />
<div class="labelin">Main Inclusion Isoform:</div><div class="contentin isoforms">{{#var:isoformid}}</div><br />
</div><br />
<div class="rowin"><br />
<div class="contentin domainimg">{{#ifeq:{{#vastDBFileExists:domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-INC.png}}|1|{{ExternalImgURL|{{SERVER}}/domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-INC.png|{{#var:isoid}}-INC}}}}</div> <br />
</div><br />
<div class="rowin"><br />
{{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Excl_main}}<br />
<div class="labelin">Main Skipping Isoform:</div><div class="contentin isoforms">{{#var:isoformid}}</div><br />
</div><br />
<div class="rowin"><br />
<div class="contentin domainimg">{{#ifeq:{{#vastDBFileExists:domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-EXC.png}}|1|{{ExternalImgURL|{{SERVER}}/domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-EXC.png|{{#var:isoid}}-EXC}}}}</div> <br />
</div><br />
<div class="rowin"><br />
{{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Incl_other}}<br />
<div class="labelin">Other Inclusion Isoforms:</div><div class="contentin isoforms">{{#var:isoformid}}</div> <br />
</div><br />
<div class="rowin"><br />
{{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Excl_other}}<br />
<div class="labelin">Other Skipping Isoforms:</div><div class="contentin isoforms">{{#var:isoformid}}</div> <br />
</div></div></div></div></div><br />
<div class="row"><div class="label small-6 large-4 columns">Associated events</div><div class="content small-6 large-8 columns">{{Associated2|{{#var:id|}}|{{#var:genome|}}}}{{HelpLinkedPage2|type=helpicon|msg=event-associated|output=data-tooltip}}</div><br />
</div>{{Event Other Assemblies|{{#var:id|}}|{{#var:genome|}}}}{{BioDB primer|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="row"><div class="label small-6 large-4 columns">Primers PCR</div><br />
<div class="content small-6 large-8 columns"><br />
<div class="block"><br />
<div class="head"><span>Suggestions for RT-PCR validation</span>{{HelpLinkedPage2|type=helpicon|msg=event-primers|output=data-tooltip}}<span class="unfold down"></span></div><br />
<div class="body folded"><br />
<div class="rowin"><div class="labelin">F: </div>{{#ifeq:{{#var:primerf|}}||<div class="contentin">No suggested primer sequences</div>|<div class="contentin bioseq">{{#var:primerf|}}</div>}}</div><br />
<div class="rowin"><div class="labelin">R: </div>{{#ifeq:{{#var:primerr|}}||<div class="contentin">No suggested primer sequences</div>|<div class="contentin bioseq">{{#var:primerr|}}</div>}}</div><br />
<div class="rowin"><div class="labelin">Band lengths: </div><div class="contentin">{{#ifeq:{{#var:pskipping|}}|||{{#var:pskipping|}}-{{#var:pinclusion|}}}}</div></div><br />
</div><br />
</div><br />
</div><br />
</div><br />
<div class="row"><br />
<div class="label small-6 large-4 columns">Annotated function<div class="submitfunction">[[EventFunction|(Submit a function)]]</div></div><br />
<div class="content small-6 large-8 columns">{{AnnotatedFunction|{{#var:id|}}|{{#var:genome|}}}}</div> <br />
</div><br />
</div><br />
<br /><br />
====GENOMIC CONTEXT====<br />
<div class="content large-12"><br />
<div style="float:right">{{HelpLinkedPage2|type=helpicon|msg=event-browser|output=data-tooltip}}</div><br />
</div><br />
<div class="browser-container genome-nor"><br />
{{#embedUCSC:chrom={{#var:chro_c|}}|start={{#var:start_c|}}|end={{#var:end_c|}}|genome_id={{#var:genome|}}}}</div><br />
====INCLUSION PATTERN====<br />
<div class="tissuevalue-list sample-chart">{{HelpLinkedPage2|type=helpicon|msg=event-tissuevalue|output=data-tooltip}}</div>{{#printCharts:}}<br />
<hr><br />
{{#specialImages:{{#var:id|}}|{{#var:genome|}}|AS_TCGA,AS_GTEX,AS_ASD_UCLA,AS_EARLY_DEV,AS_HEMATO_PREC,AS_MYOBLAST,AS_NEU_DIF,AS_SPERMATOG,AS_REPROGR_CARSTENS,AS_EARLY_DEV_MMU,AS_VICKY,AS_PANCREAS,AS_ABIOTIC,AS_BIOTIC,AS_LIGHT,AS_SPL_FACTORS|The Cancer Genome Atlas (TCGA),Genotype-Tissue Expression Project (GTEx),Autistic and control brains,Early development data (Chris),Hematopoietic precursors and cell types,Muscular differentiation time course,Neural differentiation time course,Spermatogenesis cell types,Reprogramming of fibroblasts to iPSCs,Early development data (Chris),Naive to Primed (Vicky),Pancreas cell types,Abiotic stress,Biotic stress,Light response,Splicing factor regulation|{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-tcga|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-gtex|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-asducla|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-earlydevhsa|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-hemato|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-myoblast|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-neudif|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-spermatogenesis|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-reprogr_carstens|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-earlydevmmu|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-vicky|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-pancreas|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-abiotic|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-biotic|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-light|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-spl_factors|output=data-tooltip}}}}<br />
<!--{{SpecialPSIDiv}}--><br />
{{Event Links|{{#var:genome}}|{{#var:gene_id}}|{{#var:gene_name}}}}<br />
{{PDBdiv|{{#var:genome|}}}}[[Category:Events]][[Category:Events in Genome:{{#var:genome|}}]]<nowiki /></includeonly></div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Template:Event2&diff=409
Template:Event2
2020-07-06T11:36:19Z
<p>WikiSysop: </p>
<hr />
<div><includeonly>__NOTOC__{{#vardefine:id|{{#cleanTag:{{{1}}}|at|pre}}}}{{#vardefine:genome|{{#cleanTag:{{{1}}}|pre}}}}{{BioDB_oldid|{{#var:id|}}|{{#var:genome|}}}}{{#vardefine:sub|{{#rmatch:{{#var:id}}|(\D+\d{4})|$1}}}}<nowiki />{{DISPLAYTITLE:{{#var:id|}}}}{{#CustomMsg:Help:Event.ini|ini}}<nowiki /><span id="molid" data-molid="{{{1}}}"></span><nowiki /><br />
''{{TypeEvent|{{PAGENAME}}}}''<nowiki />{{BioDB_event|{{#var:id|}}|{{#var:genome|}}}}<nowiki /><br />
{{BioDB_event_metrics|{{#var:id}}}}<nowiki /><br />
<div class="tablebox event-assembly"><br />
<div class="row"><div class="label small-6 large-4 columns">Gene</div><div class="content small-6 large-8 columns">{{#ifeq:{{#var:gene_id|}}||NA|[{{SERVER}}/gene/{{#var:gene_id|}}@{{#var:genome|}} {{#var:gene_id|}}]<br />
}}{{#ifeq:{{#var:gene_name|}}|||&nbsp;{{!}} ''{{#var:gene_name|}}'' }}</div></div><br />
<div class="row"><div class="label small-6 large-4 columns">Description</div><div class="content small-6 large-8 columns">{{#if:{{#var:description|}}|{{#var:description|}}|NA}}</div></div><br />
<div class="row"><div class="label small-6 large-4 columns">Coordinates</div><br />
<div class="content small-6 large-8 columns"><br />
<div class="block"><br />
<div class="head"><span class='genome-nor'>{{#var:chro_c|}}:{{#var:start_c|}}-{{#var:end_c|}}:{{#var:strand_c|}}</span>{{HelpLinkedPage2|type=helpicon|msg=event-coords|output=data-tooltip}}<span class="unfold up"></span></div><br />
<div class="body"><br />
<div class="rowin"><div class="labelin">Coord C1 exon</div><div class="contentin">{{#var:co_c1|}}</div></div><br />
<div class="rowin"><div class="labelin">Coord A exon</div><div class="contentin">{{#var:co_a|}}</div></div><br />
<div class="rowin"><div class="labelin">Coord C2 exon</div><div class="contentin">{{#var:co_c2|}}</div></div><br />
</div><br />
</div><br />
<br />
</div><br />
</div><br />
<div class="row"><div class="label small-6 large-4 columns">Length</div><div class="content small-6 large=8 columns">{{#var:length_n|}} bp{{HelpLinkedPage2|type=helpicon|msg=event-length|output=data-tooltip}}</div></div><br />
<div class="row"><div class="label small-6 large-4 columns">Sequences</div><br />
<div class="content small-6 large-8 columns"><br />
<div class="block"><br />
<div class="head"><span>Splice sites</span>{{HelpLinkedPage2|type=helpicon|msg=event-splice|output=data-tooltip}}<span class="unfold up"></span></div><br />
<div class="body"><br />
{{Score_SS|{{#var:id|}}|{{#var:genome|}}}}<br />
</div><br />
</div><br />
<div class="block"><br />
<div class="head"><span>Exon sequences</span>{{HelpLinkedPage2|type=helpicon|msg=event-exon|output=data-tooltip}}<span class="unfold down"></span></div><br />
<div class="body folded"><br />
<div class="rowin"><div class="labelin">Seq C1 exon</div>{{#var:seq_c1|}}</div><br />
<div class="rowin"><div class="labelin">Seq A exon</div>{{#var:seq_a|}}</div><br />
<div class="rowin"><div class="labelin">Seq C2 exon</div>{{#var:seq_c2|}}</div><br />
</div><br />
</div> <br />
</div><br />
</div><br />
<div class="row"><div class="label small-6 large-4 columns">VastDB Features</div>{{BioDB_mappability|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="content small-6 large-8 columns"><br />
<div class="block"><br />
<div class="head"><span>Vast-tools module Information</span>{{HelpLinkedPage2|type=helpicon|msg=event-vastdbfeatures|output=data-tooltip}}<span class="unfold down"></span></div><br />
<div class="body folded"><br />
<div class="rowin"><div class="labelin">Secondary ID</div><div class="contentin">{{#var:oldid|}}</div>{{HelpLinkedPage2|type=helpicon|msg=event-internal|output=data-tooltip}}</div><br />
<div class="rowin"><div class="labelin">Average complexity</div><div class="contentin">{{#var:complex|}}</div>{{HelpLinkedPage2|type=helpicon|msg=event-complexity|output=data-tooltip}}</div><br />
<div class="rowin"><div class="labelin">Mappability confidence:</div><div class="contentin">{{#ifeq:{{#var:minc|}}||NA|{{#var:minc|}}%={{#var:mexc1|}}={{#var:mexc2|}}%}}</div>{{HelpLinkedPage2|type=helpicon|msg=event-mappability|output=data-tooltip}}</div><br />
</div><br />
</div><br />
</div><br />
</div><br />
<div class="row"><div class="label small-6 large-4 columns">Protein Impact</div>{{BioDB_protimpact|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="content small-6 large-8 columns"><br />
<div class="">{{#var:protimpact|No protein impact description available}}{{HelpLinkedPage2|type=helpicon|msg=event-impact|output=data-tooltip}}<br />
</div>{{BioDB_protdisorder|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="block protimpact"><br />
<div class="head"><span>Features</span><br />
<span class="unfold up"></span></div><br />
<div class="body"><br />
<div class="rowin"><div class="labelin">Disorder rate (disopred):</div><div class="contentin">&nbsp;&nbsp;<span class="colorc1">C1</span>={{#var:c1dis|NA}} <span class="colora">A={{#var:adis|NA}}</span> <span class="colorc2">C2</span>={{#var:c2dis|NA}}</div> <br />
</div>{{HelpLinkedPage2|type=helpicon|msg=event-disopred|output=data-tooltip}}<br />
<div class="rowin"><div class="labelin">Domain overlap (PFAM):</div><div class="contentin">{{HelpLinkedPage2|type=helpicon|msg=event-pfam|output=data-tooltip}}<br />
<div class="block">{{BioDB_pfam|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="body"><br />
<div class="rowin"><div class="labelin colorc1">C1:</div><div class="contentin">{{#var:c1pfam|NA}}</div></div><br />
<div class="rowin"><div class="labelin colora">A:</div><div class="contentin">{{#var:apfam|NA}}</div></div><br />
<div class="rowin"><div class="labelin colorc2">C2:</div><div class="contentin">{{#var:c2pfam|NA}}</div></div><br />
</div><br />
</div><br />
</div></div><br />
<div class="rowin">{{#vardefine:isoid|{{#replace:{{#var:id}}|/|_}}}}<br />
{{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Incl_main}}<br />
<div class="labelin">Main Inclusion Isoform:</div><div class="contentin isoforms">{{#var:isoformid}}</div><br />
</div><br />
<div class="rowin"><br />
<div class="contentin domainimg">{{#ifeq:{{#vastDBFileExists:domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-INC.png}}|1|{{ExternalImgURL|{{SERVER}}/domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-INC.png|{{#var:isoid}}-INC}}}}</div> <br />
</div><br />
<div class="rowin"><br />
{{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Excl_main}}<br />
<div class="labelin">Main Skipping Isoform:</div><div class="contentin isoforms">{{#var:isoformid}}</div><br />
</div><br />
<div class="rowin"><br />
<div class="contentin domainimg">{{#ifeq:{{#vastDBFileExists:domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-EXC.png}}|1|{{ExternalImgURL|{{SERVER}}/domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-EXC.png|{{#var:isoid}}-EXC}}}}</div> <br />
</div><br />
<div class="rowin"><br />
{{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Incl_other}}<br />
<div class="labelin">Other Inclusion Isoforms:</div><div class="contentin isoforms">{{#var:isoformid}}</div> <br />
</div><br />
<div class="rowin"><br />
{{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Excl_other}}<br />
<div class="labelin">Other Skipping Isoforms:</div><div class="contentin isoforms">{{#var:isoformid}}</div> <br />
</div></div></div></div></div><br />
<div class="row"><div class="label small-6 large-4 columns">Associated events</div><div class="content small-6 large-8 columns">{{Associated2|{{#var:id|}}|{{#var:genome|}}}}{{HelpLinkedPage2|type=helpicon|msg=event-associated|output=data-tooltip}}</div><br />
</div>{{Event Other Assemblies|{{#var:id|}}|{{#var:genome|}}}}{{BioDB primer|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="row"><div class="label small-6 large-4 columns">Primers PCR</div><br />
<div class="content small-6 large-8 columns"><br />
<div class="block"><br />
<div class="head"><span>Suggestions for RT-PCR validation</span>{{HelpLinkedPage2|type=helpicon|msg=event-primers|output=data-tooltip}}<span class="unfold down"></span></div><br />
<div class="body folded"><br />
<div class="rowin"><div class="labelin">F: </div>{{#ifeq:{{#var:primerf|}}||<div class="contentin">No suggested primer sequences</div>|<div class="contentin bioseq">{{#var:primerf|}}</div>}}</div><br />
<div class="rowin"><div class="labelin">R: </div>{{#ifeq:{{#var:primerr|}}||<div class="contentin">No suggested primer sequences</div>|<div class="contentin bioseq">{{#var:primerr|}}</div>}}</div><br />
<div class="rowin"><div class="labelin">Band lengths: </div><div class="contentin">{{#ifeq:{{#var:pskipping|}}|||{{#var:pskipping|}}-{{#var:pinclusion|}}}}</div></div><br />
</div><br />
</div><br />
</div><br />
</div><br />
<div class="row"><br />
<div class="label small-6 large-4 columns">Annotated function<div class="submitfunction">[[EventFunction|(Submit a function)]]</div></div><br />
<div class="content small-6 large-8 columns">{{AnnotatedFunction|{{#var:id|}}|{{#var:genome|}}}}</div> <br />
</div><br />
</div><br />
<br /><br />
====GENOMIC CONTEXT====<br />
<div class="content large-12"><br />
<div style="float:right">{{HelpLinkedPage2|type=helpicon|msg=event-browser|output=data-tooltip}}</div><br />
</div><br />
<div class="browser-container genome-nor"><br />
{{#embedUCSC:chrom={{#var:chro_c|}}|start={{#var:start_c|}}|end={{#var:end_c|}}|genome_id={{#var:genome|}}}}</div><br />
====INCLUSION PATTERN====<br />
<div class="tissuevalue-list sample-chart">{{HelpLinkedPage2|type=helpicon|msg=event-tissuevalue|output=data-tooltip}}</div>{{#printCharts:}}<br />
<hr><br />
{{#specialImages:{{#var:id|}}|{{#var:genome|}}|AS_TCGA,AS_GTEX,AS_ASD_UCLA,AS_EARLY_DEV,AS_HEMATO_PREC,AS_MYOBLAST,AS_NEU_DIF,AS_SPERMATOG,AS_REPROGR_CARSTENS,AS_EARLY_DEV_MMU,AS_VICKY,AS_PANCREAS,AS_ABIOTIC,AS_BIOTIC,AS_LIGHT,AS_SPL_FACTORS|The Cancer Genome Atlas (TCGA),Genotype-Tissue Expression Project (GTEx),Autistic and control brains,Early development data (Chris),Hematopoietic precursors and cell types,Muscular differentiation time course,Neural differentiation time course,Spermatogenesis cell types,Reprogramming of fibroblasts to iPSCs,Early development data (Chris),Naive to Primed (Vicky),Pancreas cell types,Abiotic stress,Biotic stress,Light response,Splicing factor regulation|{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-tcga|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-gtex|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-asducla|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-earlydevhsa|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-hemato|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-myoblast|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-neudif|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-spermatogenesis|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-reprogr_carstens|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-earlydevmmu|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-vicky|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-pancreas|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-abiotic|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-biotic|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-light|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-spl_factors|output=data-tooltip}}}}<br />
<!--{{SpecialPSIDiv}}--><br />
{{Event Links|{{#var:genome}}|{{#var:gene_id}}|{{#var:gene_name}}}}<br />
{{PDBdiv|{{#var:genome|}}}}[[Category:Events]][[Category:Events in Genome:{{#var:genome|}}]]<nowiki /></includeonly></div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Template:Event2&diff=408
Template:Event2
2020-07-06T11:32:00Z
<p>WikiSysop: Undo revision 407 by WikiSysop (talk)</p>
<hr />
<div><includeonly>__NOTOC__{{#vardefine:id|{{#cleanTag:{{{1}}}|at|pre}}}}{{#vardefine:genome|{{#cleanTag:{{{1}}}|pre}}}}{{BioDB_oldid|{{#var:id|}}|{{#var:genome|}}}}{{#vardefine:sub|{{#rmatch:{{#var:id}}|(\D+\d{4})|$1}}}}<nowiki />{{DISPLAYTITLE:{{#var:id|}}}}{{#CustomMsg:Help:Event.ini|ini}}<nowiki /><span id="molid" data-molid="{{{1}}}"></span><nowiki /><br />
''{{TypeEvent|{{PAGENAME}}}}''<nowiki />{{BioDB_event|{{#var:id|}}|{{#var:genome|}}}}<nowiki /><br />
{{BioDB_event_metrics|{{#var:id}}}}<nowiki /><br />
<div class="tablebox event-assembly"><br />
<div class="row"><div class="label small-6 large-4 columns">Gene</div><div class="content small-6 large-8 columns">{{#ifeq:{{#var:gene_id|}}||NA|[{{SERVER}}/gene/{{#var:gene_id|}}@{{#var:genome|}} {{#var:gene_id|}}]<br />
}}{{#ifeq:{{#var:gene_name|}}|||&nbsp;{{!}} ''{{#var:gene_name|}}'' }}</div></div><br />
<div class="row"><div class="label small-6 large-4 columns">Description</div><div class="content small-6 large-8 columns">{{#if:{{#var:description|}}|{{#var:description|}}|NA}}</div></div><br />
<div class="row"><div class="label small-6 large-4 columns">Coordinates</div><br />
<div class="content small-6 large-8 columns"><br />
<div class="block"><br />
<div class="head"><span class='genome-nor'>{{#var:chro_c|}}:{{#var:start_c|}}-{{#var:end_c|}}:{{#var:strand_c|}}</span>{{HelpLinkedPage2|type=helpicon|msg=event-coords|output=data-tooltip}}<span class="unfold up"></span></div><br />
<div class="body"><br />
<div class="rowin"><div class="labelin">Coord C1 exon</div><div class="contentin">{{#var:co_c1|}}</div></div><br />
<div class="rowin"><div class="labelin">Coord A exon</div><div class="contentin">{{#var:co_a|}}</div></div><br />
<div class="rowin"><div class="labelin">Coord C2 exon</div><div class="contentin">{{#var:co_c2|}}</div></div><br />
</div><br />
</div><br />
<br />
</div><br />
</div><br />
<div class="row"><div class="label small-6 large-4 columns">Length</div><div class="content small-6 large=8 columns">{{#var:length_n|}} bp{{HelpLinkedPage2|type=helpicon|msg=event-length|output=data-tooltip}}</div></div><br />
<div class="row"><div class="label small-6 large-4 columns">Sequences</div><br />
<div class="content small-6 large-8 columns"><br />
<div class="block"><br />
<div class="head"><span>Splice sites</span>{{HelpLinkedPage2|type=helpicon|msg=event-splice|output=data-tooltip}}<span class="unfold up"></span></div><br />
<div class="body"><br />
{{Score_SS|{{#var:id|}}|{{#var:genome|}}}}<br />
</div><br />
</div><br />
<div class="block"><br />
<div class="head"><span>Exon sequences</span>{{HelpLinkedPage2|type=helpicon|msg=event-exon|output=data-tooltip}}<span class="unfold down"></span></div><br />
<div class="body folded"><br />
<div class="rowin"><div class="labelin">Seq C1 exon</div>{{#var:seq_c1|}}</div><br />
<div class="rowin"><div class="labelin">Seq A exon</div>{{#var:seq_a|}}</div><br />
<div class="rowin"><div class="labelin">Seq C2 exon</div>{{#var:seq_c2|}}</div><br />
</div><br />
</div> <br />
</div><br />
</div><br />
<div class="row"><div class="label small-6 large-4 columns">VastDB Features</div>{{BioDB_mappability|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="content small-6 large-8 columns"><br />
<div class="block"><br />
<div class="head"><span>Vast-tools module Information</span>{{HelpLinkedPage2|type=helpicon|msg=event-vastdbfeatures|output=data-tooltip}}<span class="unfold down"></span></div><br />
<div class="body folded"><br />
<div class="rowin"><div class="labelin">Secondary ID</div><div class="contentin">{{#var:oldid|}}</div>{{HelpLinkedPage2|type=helpicon|msg=event-internal|output=data-tooltip}}</div><br />
<div class="rowin"><div class="labelin">Average complexity</div><div class="contentin">{{#var:complex|}}</div>{{HelpLinkedPage2|type=helpicon|msg=event-complexity|output=data-tooltip}}</div><br />
<div class="rowin"><div class="labelin">Mappability confidence:</div><div class="contentin">{{#ifeq:{{#var:minc|}}||NA|{{#var:minc|}}%={{#var:mexc1|}}={{#var:mexc2|}}%}}</div>{{HelpLinkedPage2|type=helpicon|msg=event-mappability|output=data-tooltip}}</div><br />
</div><br />
</div><br />
</div><br />
</div><br />
<div class="row"><div class="label small-6 large-4 columns">Protein Impact</div>{{BioDB_protimpact|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="content small-6 large-8 columns"><br />
<div class="">{{#var:protimpact|No protein impact description available}}{{HelpLinkedPage2|type=helpicon|msg=event-impact|output=data-tooltip}}<br />
</div>{{BioDB_protdisorder|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="block protimpact"><br />
<div class="head"><span>Features</span><br />
<span class="unfold up"></span></div><br />
<div class="body"><br />
<div class="rowin"><div class="labelin">Disorder rate (disopred):</div><div class="contentin">&nbsp;&nbsp;<span class="colorc1">C1</span>={{#var:c1dis|NA}} <span class="colora">A={{#var:adis|NA}}</span> <span class="colorc2">C2</span>={{#var:c2dis|NA}}</div> <br />
</div> <br />
<div class="rowin"><div class="labelin">Domain overlap (PFAM):</div><div class="contentin"><br />
<div class="block">{{BioDB_pfam|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="body"><br />
<div class="rowin"><div class="labelin colorc1">C1:</div><div class="contentin">{{#var:c1pfam|NA}}</div></div><br />
<div class="rowin"><div class="labelin colora">A:</div><div class="contentin">{{#var:apfam|NA}}</div></div><br />
<div class="rowin"><div class="labelin colorc2">C2:</div><div class="contentin">{{#var:c2pfam|NA}}</div></div><br />
</div><br />
</div><br />
</div></div><br />
<div class="rowin">{{#vardefine:isoid|{{#replace:{{#var:id}}|/|_}}}}<br />
{{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Incl_main}}<br />
<div class="labelin">Main Inclusion Isoform:</div><div class="contentin isoforms">{{#var:isoformid}}</div><br />
</div><br />
<div class="rowin"><br />
<div class="contentin domainimg">{{#ifeq:{{#vastDBFileExists:domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-INC.png}}|1|{{ExternalImgURL|{{SERVER}}/domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-INC.png|{{#var:isoid}}-INC}}}}</div> <br />
</div><br />
<div class="rowin"><br />
{{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Excl_main}}<br />
<div class="labelin">Main Skipping Isoform:</div><div class="contentin isoforms">{{#var:isoformid}}</div><br />
</div><br />
<div class="rowin"><br />
<div class="contentin domainimg">{{#ifeq:{{#vastDBFileExists:domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-EXC.png}}|1|{{ExternalImgURL|{{SERVER}}/domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-EXC.png|{{#var:isoid}}-EXC}}}}</div> <br />
</div><br />
<div class="rowin"><br />
{{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Incl_other}}<br />
<div class="labelin">Other Inclusion Isoforms:</div><div class="contentin isoforms">{{#var:isoformid}}</div> <br />
</div><br />
<div class="rowin"><br />
{{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Excl_other}}<br />
<div class="labelin">Other Skipping Isoforms:</div><div class="contentin isoforms">{{#var:isoformid}}</div> <br />
</div></div></div></div></div><br />
<div class="row"><div class="label small-6 large-4 columns">Associated events</div><div class="content small-6 large-8 columns">{{Associated2|{{#var:id|}}|{{#var:genome|}}}}{{HelpLinkedPage2|type=helpicon|msg=event-associated|output=data-tooltip}}</div><br />
</div>{{Event Other Assemblies|{{#var:id|}}|{{#var:genome|}}}}{{BioDB primer|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="row"><div class="label small-6 large-4 columns">Primers PCR</div><br />
<div class="content small-6 large-8 columns"><br />
<div class="block"><br />
<div class="head"><span>Suggestions for RT-PCR validation</span>{{HelpLinkedPage2|type=helpicon|msg=event-primers|output=data-tooltip}}<span class="unfold down"></span></div><br />
<div class="body folded"><br />
<div class="rowin"><div class="labelin">F: </div>{{#ifeq:{{#var:primerf|}}||<div class="contentin">No suggested primer sequences</div>|<div class="contentin bioseq">{{#var:primerf|}}</div>}}</div><br />
<div class="rowin"><div class="labelin">R: </div>{{#ifeq:{{#var:primerr|}}||<div class="contentin">No suggested primer sequences</div>|<div class="contentin bioseq">{{#var:primerr|}}</div>}}</div><br />
<div class="rowin"><div class="labelin">Band lengths: </div><div class="contentin">{{#ifeq:{{#var:pskipping|}}|||{{#var:pskipping|}}-{{#var:pinclusion|}}}}</div></div><br />
</div><br />
</div><br />
</div><br />
</div><br />
<div class="row"><br />
<div class="label small-6 large-4 columns">Annotated function<div class="submitfunction">[[EventFunction|(Submit a function)]]</div></div><br />
<div class="content small-6 large-8 columns">{{AnnotatedFunction|{{#var:id|}}|{{#var:genome|}}}}</div> <br />
</div><br />
</div><br />
<br /><br />
====GENOMIC CONTEXT====<br />
<div class="content large-12"><br />
<div style="float:right">{{HelpLinkedPage2|type=helpicon|msg=event-browser|output=data-tooltip}}</div><br />
</div><br />
<div class="browser-container genome-nor"><br />
{{#embedUCSC:chrom={{#var:chro_c|}}|start={{#var:start_c|}}|end={{#var:end_c|}}|genome_id={{#var:genome|}}}}</div><br />
====INCLUSION PATTERN====<br />
<div class="tissuevalue-list sample-chart">{{HelpLinkedPage2|type=helpicon|msg=event-tissuevalue|output=data-tooltip}}</div>{{#printCharts:}}<br />
<hr><br />
{{#specialImages:{{#var:id|}}|{{#var:genome|}}|AS_TCGA,AS_GTEX,AS_ASD_UCLA,AS_EARLY_DEV,AS_HEMATO_PREC,AS_MYOBLAST,AS_NEU_DIF,AS_SPERMATOG,AS_REPROGR_CARSTENS,AS_EARLY_DEV_MMU,AS_VICKY,AS_PANCREAS,AS_ABIOTIC,AS_BIOTIC,AS_LIGHT,AS_SPL_FACTORS|The Cancer Genome Atlas (TCGA),Genotype-Tissue Expression Project (GTEx),Autistic and control brains,Early development data (Chris),Hematopoietic precursors and cell types,Muscular differentiation time course,Neural differentiation time course,Spermatogenesis cell types,Reprogramming of fibroblasts to iPSCs,Early development data (Chris),Naive to Primed (Vicky),Pancreas cell types,Abiotic stress,Biotic stress,Light response,Splicing factor regulation|{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-tcga|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-gtex|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-asducla|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-earlydevhsa|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-hemato|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-myoblast|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-neudif|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-spermatogenesis|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-reprogr_carstens|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-earlydevmmu|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-vicky|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-pancreas|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-abiotic|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-biotic|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-light|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-spl_factors|output=data-tooltip}}}}<br />
<!--{{SpecialPSIDiv}}--><br />
{{Event Links|{{#var:genome}}|{{#var:gene_id}}|{{#var:gene_name}}}}<br />
{{PDBdiv|{{#var:genome|}}}}[[Category:Events]][[Category:Events in Genome:{{#var:genome|}}]]<nowiki /></includeonly></div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Template:Event2&diff=407
Template:Event2
2020-07-06T11:31:37Z
<p>WikiSysop: </p>
<hr />
<div><includeonly>__NOTOC__{{#vardefine:id|{{#cleanTag:{{{1}}}|at|pre}}}}{{#vardefine:genome|{{#cleanTag:{{{1}}}|pre}}}}{{BioDB_oldid|{{#var:id|}}|{{#var:genome|}}}}{{#vardefine:sub|{{#rmatch:{{#var:id}}|(\D+\d{4})|$1}}}}<nowiki />{{DISPLAYTITLE:{{#var:id|}}}}{{#CustomMsg:Help:Event.ini|ini}}<nowiki /><span id="molid" data-molid="{{{1}}}"></span><nowiki /><br />
''{{TypeEvent|{{PAGENAME}}}}''<nowiki />{{BioDB_event|{{#var:id|}}|{{#var:genome|}}}}<nowiki /><br />
{{BioDB_event_metrics|{{#var:id}}}}<nowiki /><br />
<div class="tablebox event-assembly"><br />
<div class="row"><div class="label small-6 large-4 columns">Gene</div><div class="content small-6 large-8 columns">{{#ifeq:{{#var:gene_id|}}||NA|[{{SERVER}}/gene/{{#var:gene_id|}}@{{#var:genome|}} {{#var:gene_id|}}]<br />
}}{{#ifeq:{{#var:gene_name|}}|||&nbsp;{{!}} ''{{#var:gene_name|}}'' }}</div></div><br />
<div class="row"><div class="label small-6 large-4 columns">Description</div><div class="content small-6 large-8 columns">{{#if:{{#var:description|}}|{{#var:description|}}|NA}}</div></div><br />
<div class="row"><div class="label small-6 large-4 columns">Coordinates</div><br />
<div class="content small-6 large-8 columns"><br />
<div class="block"><br />
<div class="head"><span class='genome-nor'>{{#var:chro_c|}}:{{#var:start_c|}}-{{#var:end_c|}}:{{#var:strand_c|}}</span>{{HelpLinkedPage2|type=helpicon|msg=event-coords|output=data-tooltip}}<span class="unfold up"></span></div><br />
<div class="body"><br />
<div class="rowin"><div class="labelin">Coord C1 exon</div><div class="contentin">{{#var:co_c1|}}</div></div><br />
<div class="rowin"><div class="labelin">Coord A exon</div><div class="contentin">{{#var:co_a|}}</div></div><br />
<div class="rowin"><div class="labelin">Coord C2 exon</div><div class="contentin">{{#var:co_c2|}}</div></div><br />
</div><br />
</div><br />
<br />
</div><br />
</div><br />
<div class="row"><div class="label small-6 large-4 columns">Length</div><div class="content small-6 large=8 columns">{{#var:length_n|}} bp{{HelpLinkedPage2|type=helpicon|msg=event-length|output=data-tooltip}}</div></div><br />
<div class="row"><div class="label small-6 large-4 columns">Sequences</div><br />
<div class="content small-6 large-8 columns"><br />
<div class="block"><br />
<div class="head"><span>Splice sites</span>{{HelpLinkedPage2|type=helpicon|msg=event-splice|output=data-tooltip}}<span class="unfold up"></span></div><br />
<div class="body"><br />
{{Score_SS|{{#var:id|}}|{{#var:genome|}}}}<br />
</div><br />
</div><br />
<div class="block"><br />
<div class="head"><span>Exon sequences</span>{{HelpLinkedPage2|type=helpicon|msg=event-exon|output=data-tooltip}}<span class="unfold down"></span></div><br />
<div class="body folded"><br />
<div class="rowin"><div class="labelin">Seq C1 exon</div>{{#var:seq_c1|}}</div><br />
<div class="rowin"><div class="labelin">Seq A exon</div>{{#var:seq_a|}}</div><br />
<div class="rowin"><div class="labelin">Seq C2 exon</div>{{#var:seq_c2|}}</div><br />
</div><br />
</div> <br />
</div><br />
</div><br />
<div class="row"><div class="label small-6 large-4 columns">VastDB Features</div>{{BioDB_mappability|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="content small-6 large-8 columns"><br />
<div class="block"><br />
<div class="head"><span>Vast-tools module Information</span>{{HelpLinkedPage2|type=helpicon|msg=event-vastdbfeatures|output=data-tooltip}}<span class="unfold down"></span></div><br />
<div class="body folded"><br />
<div class="rowin"><div class="labelin">Secondary ID</div><div class="contentin">{{#var:oldid|}}</div>{{HelpLinkedPage2|type=helpicon|msg=event-internal|output=data-tooltip}}</div><br />
<div class="rowin"><div class="labelin">Average complexity</div><div class="contentin">{{#var:complex|}}</div>{{HelpLinkedPage2|type=helpicon|msg=event-complexity|output=data-tooltip}}</div><br />
<div class="rowin"><div class="labelin">Mappability confidence:</div><div class="contentin">{{#ifeq:{{#var:minc|}}||NA|{{#var:minc|}}%={{#var:mexc1|}}={{#var:mexc2|}}%}}</div>{{HelpLinkedPage2|type=helpicon|msg=event-mappability|output=data-tooltip}}</div><br />
</div><br />
</div><br />
</div><br />
</div><br />
<div class="row"><div class="label small-6 large-4 columns">Protein Impact</div>{{BioDB_protimpact|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="content small-6 large-8 columns"><br />
<div class="">{{#var:protimpact|No protein impact description available}}{{HelpLinkedPage2|type=helpicon|msg=event-impact|output=data-tooltip}}<br />
</div>{{BioDB_protdisorder|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="block protimpact"><br />
<div class="head"><span>Features</span><br />
<span class="unfold up"></span></div><br />
<div class="body"><br />
<div class="rowin"><div class="labelin">Disorder rate (disopred):</div><div class="contentin">&nbsp;&nbsp;<span class="colorc1">C1</span>={{#var:c1dis|NA}} <span class="colora">A={{#var:adis|NA}}</span> <span class="colorc2">C2</span>={{#var:c2dis|NA}}</div> <br />
</div> <br />
<div class="rowin"><div class="labelin">Domain overlap (PFAM):</div><div class="contentin"><br />
<div class="block">{{BioDB_pfam|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="body"><br />
<div class="rowin"><div class="labelin colorc1">C1:</div><div class="contentin">{{#var:c1pfam|NA}}</div></div><br />
<div class="rowin"><div class="labelin colora">A:</div><div class="contentin">{{#var:apfam|NA}}</div></div><br />
<div class="rowin"><div class="labelin colorc2">C2:</div><div class="contentin">{{#var:c2pfam|NA}}</div></div><br />
</div><br />
</div><br />
</div></div><br />
<div class="rowin">{{#vardefine:isoid|{{#replace:{{#var:id}}|/|_}}}}<br />
{{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Incl_main}}<br />
<div class="labelin">Main Inclusion Isoform:</div><div class="rowin"><div class="contentin isoforms">{{#var:isoformid}}</div></div><br />
</div><br />
<div class="rowin"><br />
<div class="contentin domainimg">{{#ifeq:{{#vastDBFileExists:domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-INC.png}}|1|{{ExternalImgURL|{{SERVER}}/domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-INC.png|{{#var:isoid}}-INC}}}}</div> <br />
</div><br />
<div class="rowin"><br />
{{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Excl_main}}<br />
<div class="labelin">Main Skipping Isoform:</div><div class="rowin"><div class="contentin isoforms">{{#var:isoformid}}</div></div><br />
</div><br />
<div class="rowin"><br />
<div class="contentin domainimg">{{#ifeq:{{#vastDBFileExists:domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-EXC.png}}|1|{{ExternalImgURL|{{SERVER}}/domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-EXC.png|{{#var:isoid}}-EXC}}}}</div> <br />
</div><br />
<div class="rowin"><br />
{{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Incl_other}}<br />
<div class="labelin">Other Inclusion Isoforms:</div><div class="rowin"><div class="contentin isoforms">{{#var:isoformid}}</div></div><br />
</div><br />
<div class="rowin"><br />
{{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Excl_other}}<br />
<div class="labelin">Other Skipping Isoforms:</div><div class="rowin"><div class="contentin isoforms">{{#var:isoformid}}</div></div><br />
</div></div></div></div></div><br />
<div class="row"><div class="label small-6 large-4 columns">Associated events</div><div class="content small-6 large-8 columns">{{Associated2|{{#var:id|}}|{{#var:genome|}}}}{{HelpLinkedPage2|type=helpicon|msg=event-associated|output=data-tooltip}}</div><br />
</div>{{Event Other Assemblies|{{#var:id|}}|{{#var:genome|}}}}{{BioDB primer|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="row"><div class="label small-6 large-4 columns">Primers PCR</div><br />
<div class="content small-6 large-8 columns"><br />
<div class="block"><br />
<div class="head"><span>Suggestions for RT-PCR validation</span>{{HelpLinkedPage2|type=helpicon|msg=event-primers|output=data-tooltip}}<span class="unfold down"></span></div><br />
<div class="body folded"><br />
<div class="rowin"><div class="labelin">F: </div>{{#ifeq:{{#var:primerf|}}||<div class="contentin">No suggested primer sequences</div>|<div class="contentin bioseq">{{#var:primerf|}}</div>}}</div><br />
<div class="rowin"><div class="labelin">R: </div>{{#ifeq:{{#var:primerr|}}||<div class="contentin">No suggested primer sequences</div>|<div class="contentin bioseq">{{#var:primerr|}}</div>}}</div><br />
<div class="rowin"><div class="labelin">Band lengths: </div><div class="contentin">{{#ifeq:{{#var:pskipping|}}|||{{#var:pskipping|}}-{{#var:pinclusion|}}}}</div></div><br />
</div><br />
</div><br />
</div><br />
</div><br />
<div class="row"><br />
<div class="label small-6 large-4 columns">Annotated function<div class="submitfunction">[[EventFunction|(Submit a function)]]</div></div><br />
<div class="content small-6 large-8 columns">{{AnnotatedFunction|{{#var:id|}}|{{#var:genome|}}}}</div> <br />
</div><br />
</div><br />
<br /><br />
====GENOMIC CONTEXT====<br />
<div class="content large-12"><br />
<div style="float:right">{{HelpLinkedPage2|type=helpicon|msg=event-browser|output=data-tooltip}}</div><br />
</div><br />
<div class="browser-container genome-nor"><br />
{{#embedUCSC:chrom={{#var:chro_c|}}|start={{#var:start_c|}}|end={{#var:end_c|}}|genome_id={{#var:genome|}}}}</div><br />
====INCLUSION PATTERN====<br />
<div class="tissuevalue-list sample-chart">{{HelpLinkedPage2|type=helpicon|msg=event-tissuevalue|output=data-tooltip}}</div>{{#printCharts:}}<br />
<hr><br />
{{#specialImages:{{#var:id|}}|{{#var:genome|}}|AS_TCGA,AS_GTEX,AS_ASD_UCLA,AS_EARLY_DEV,AS_HEMATO_PREC,AS_MYOBLAST,AS_NEU_DIF,AS_SPERMATOG,AS_REPROGR_CARSTENS,AS_EARLY_DEV_MMU,AS_VICKY,AS_PANCREAS,AS_ABIOTIC,AS_BIOTIC,AS_LIGHT,AS_SPL_FACTORS|The Cancer Genome Atlas (TCGA),Genotype-Tissue Expression Project (GTEx),Autistic and control brains,Early development data (Chris),Hematopoietic precursors and cell types,Muscular differentiation time course,Neural differentiation time course,Spermatogenesis cell types,Reprogramming of fibroblasts to iPSCs,Early development data (Chris),Naive to Primed (Vicky),Pancreas cell types,Abiotic stress,Biotic stress,Light response,Splicing factor regulation|{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-tcga|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-gtex|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-asducla|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-earlydevhsa|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-hemato|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-myoblast|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-neudif|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-spermatogenesis|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-reprogr_carstens|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-earlydevmmu|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-vicky|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-pancreas|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-abiotic|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-biotic|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-light|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-spl_factors|output=data-tooltip}}}}<br />
<!--{{SpecialPSIDiv}}--><br />
{{Event Links|{{#var:genome}}|{{#var:gene_id}}|{{#var:gene_name}}}}<br />
{{PDBdiv|{{#var:genome|}}}}[[Category:Events]][[Category:Events in Genome:{{#var:genome|}}]]<nowiki /></includeonly></div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Template:Event2&diff=406
Template:Event2
2020-07-06T11:29:09Z
<p>WikiSysop: </p>
<hr />
<div><includeonly>__NOTOC__{{#vardefine:id|{{#cleanTag:{{{1}}}|at|pre}}}}{{#vardefine:genome|{{#cleanTag:{{{1}}}|pre}}}}{{BioDB_oldid|{{#var:id|}}|{{#var:genome|}}}}{{#vardefine:sub|{{#rmatch:{{#var:id}}|(\D+\d{4})|$1}}}}<nowiki />{{DISPLAYTITLE:{{#var:id|}}}}{{#CustomMsg:Help:Event.ini|ini}}<nowiki /><span id="molid" data-molid="{{{1}}}"></span><nowiki /><br />
''{{TypeEvent|{{PAGENAME}}}}''<nowiki />{{BioDB_event|{{#var:id|}}|{{#var:genome|}}}}<nowiki /><br />
{{BioDB_event_metrics|{{#var:id}}}}<nowiki /><br />
<div class="tablebox event-assembly"><br />
<div class="row"><div class="label small-6 large-4 columns">Gene</div><div class="content small-6 large-8 columns">{{#ifeq:{{#var:gene_id|}}||NA|[{{SERVER}}/gene/{{#var:gene_id|}}@{{#var:genome|}} {{#var:gene_id|}}]<br />
}}{{#ifeq:{{#var:gene_name|}}|||&nbsp;{{!}} ''{{#var:gene_name|}}'' }}</div></div><br />
<div class="row"><div class="label small-6 large-4 columns">Description</div><div class="content small-6 large-8 columns">{{#if:{{#var:description|}}|{{#var:description|}}|NA}}</div></div><br />
<div class="row"><div class="label small-6 large-4 columns">Coordinates</div><br />
<div class="content small-6 large-8 columns"><br />
<div class="block"><br />
<div class="head"><span class='genome-nor'>{{#var:chro_c|}}:{{#var:start_c|}}-{{#var:end_c|}}:{{#var:strand_c|}}</span>{{HelpLinkedPage2|type=helpicon|msg=event-coords|output=data-tooltip}}<span class="unfold up"></span></div><br />
<div class="body"><br />
<div class="rowin"><div class="labelin">Coord C1 exon</div><div class="contentin">{{#var:co_c1|}}</div></div><br />
<div class="rowin"><div class="labelin">Coord A exon</div><div class="contentin">{{#var:co_a|}}</div></div><br />
<div class="rowin"><div class="labelin">Coord C2 exon</div><div class="contentin">{{#var:co_c2|}}</div></div><br />
</div><br />
</div><br />
<br />
</div><br />
</div><br />
<div class="row"><div class="label small-6 large-4 columns">Length</div><div class="content small-6 large=8 columns">{{#var:length_n|}} bp{{HelpLinkedPage2|type=helpicon|msg=event-length|output=data-tooltip}}</div></div><br />
<div class="row"><div class="label small-6 large-4 columns">Sequences</div><br />
<div class="content small-6 large-8 columns"><br />
<div class="block"><br />
<div class="head"><span>Splice sites</span>{{HelpLinkedPage2|type=helpicon|msg=event-splice|output=data-tooltip}}<span class="unfold up"></span></div><br />
<div class="body"><br />
{{Score_SS|{{#var:id|}}|{{#var:genome|}}}}<br />
</div><br />
</div><br />
<div class="block"><br />
<div class="head"><span>Exon sequences</span>{{HelpLinkedPage2|type=helpicon|msg=event-exon|output=data-tooltip}}<span class="unfold down"></span></div><br />
<div class="body folded"><br />
<div class="rowin"><div class="labelin">Seq C1 exon</div>{{#var:seq_c1|}}</div><br />
<div class="rowin"><div class="labelin">Seq A exon</div>{{#var:seq_a|}}</div><br />
<div class="rowin"><div class="labelin">Seq C2 exon</div>{{#var:seq_c2|}}</div><br />
</div><br />
</div> <br />
</div><br />
</div><br />
<div class="row"><div class="label small-6 large-4 columns">VastDB Features</div>{{BioDB_mappability|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="content small-6 large-8 columns"><br />
<div class="block"><br />
<div class="head"><span>Vast-tools module Information</span>{{HelpLinkedPage2|type=helpicon|msg=event-vastdbfeatures|output=data-tooltip}}<span class="unfold down"></span></div><br />
<div class="body folded"><br />
<div class="rowin"><div class="labelin">Secondary ID</div><div class="contentin">{{#var:oldid|}}</div>{{HelpLinkedPage2|type=helpicon|msg=event-internal|output=data-tooltip}}</div><br />
<div class="rowin"><div class="labelin">Average complexity</div><div class="contentin">{{#var:complex|}}</div>{{HelpLinkedPage2|type=helpicon|msg=event-complexity|output=data-tooltip}}</div><br />
<div class="rowin"><div class="labelin">Mappability confidence:</div><div class="contentin">{{#ifeq:{{#var:minc|}}||NA|{{#var:minc|}}%={{#var:mexc1|}}={{#var:mexc2|}}%}}</div>{{HelpLinkedPage2|type=helpicon|msg=event-mappability|output=data-tooltip}}</div><br />
</div><br />
</div><br />
</div><br />
</div><br />
<div class="row"><div class="label small-6 large-4 columns">Protein Impact</div>{{BioDB_protimpact|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="content small-6 large-8 columns"><br />
<div class="">{{#var:protimpact|No protein impact description available}}{{HelpLinkedPage2|type=helpicon|msg=event-impact|output=data-tooltip}}<br />
</div>{{BioDB_protdisorder|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="block protimpact"><br />
<div class="head"><span>Features</span><br />
<span class="unfold up"></span></div><br />
<div class="body"><br />
<div class="rowin"><div class="labelin">Disorder rate (disopred):</div><div class="contentin">&nbsp;&nbsp;<span class="colorc1">C1</span>={{#var:c1dis|NA}} <span class="colora">A={{#var:adis|NA}}</span> <span class="colorc2">C2</span>={{#var:c2dis|NA}}</div> <br />
</div> <br />
<div class="rowin"><div class="labelin">Domain overlap (PFAM):</div><div class="contentin"><br />
<div class="block">{{BioDB_pfam|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="body"><br />
<div class="rowin"><div class="labelin colorc1">C1:</div><div class="contentin">{{#var:c1pfam|NA}}</div></div><br />
<div class="rowin"><div class="labelin colora">A:</div><div class="contentin">{{#var:apfam|NA}}</div></div><br />
<div class="rowin"><div class="labelin colorc2">C2:</div><div class="contentin">{{#var:c2pfam|NA}}</div></div><br />
</div><br />
</div><br />
</div></div><br />
<div class="rowin">{{#vardefine:isoid|{{#replace:{{#var:id}}|/|_}}}}<br />
{{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Incl_main}}<br />
<div class="labelin">Main Inclusion Isoform:</div><div class="contentin isoforms">{{#var:isoformid}}</div><br />
</div><br />
<div class="rowin"><br />
<div class="contentin domainimg">{{#ifeq:{{#vastDBFileExists:domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-INC.png}}|1|{{ExternalImgURL|{{SERVER}}/domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-INC.png|{{#var:isoid}}-INC}}}}</div> <br />
</div><br />
<div class="rowin"><br />
{{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Excl_main}}<br />
<div class="labelin">Main Skipping Isoform:</div><div class="contentin isoforms">{{#var:isoformid}}</div><br />
</div><br />
<div class="rowin"><br />
<div class="contentin domainimg">{{#ifeq:{{#vastDBFileExists:domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-EXC.png}}|1|{{ExternalImgURL|{{SERVER}}/domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-EXC.png|{{#var:isoid}}-EXC}}}}</div> <br />
</div><br />
<div class="rowin"><br />
{{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Incl_other}}<br />
<div class="labelin">Other Inclusion Isoforms:</div><div class="contentin isoforms">{{#var:isoformid}}</div> <br />
</div><br />
<div class="rowin"><br />
{{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Excl_other}}<br />
<div class="labelin">Other Skipping Isoforms:</div><div class="contentin isoforms">{{#var:isoformid}}</div> <br />
</div></div></div></div></div><br />
<div class="row"><div class="label small-6 large-4 columns">Associated events</div><div class="content small-6 large-8 columns">{{Associated2|{{#var:id|}}|{{#var:genome|}}}}{{HelpLinkedPage2|type=helpicon|msg=event-associated|output=data-tooltip}}</div><br />
</div>{{Event Other Assemblies|{{#var:id|}}|{{#var:genome|}}}}{{BioDB primer|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="row"><div class="label small-6 large-4 columns">Primers PCR</div><br />
<div class="content small-6 large-8 columns"><br />
<div class="block"><br />
<div class="head"><span>Suggestions for RT-PCR validation</span>{{HelpLinkedPage2|type=helpicon|msg=event-primers|output=data-tooltip}}<span class="unfold down"></span></div><br />
<div class="body folded"><br />
<div class="rowin"><div class="labelin">F: </div>{{#ifeq:{{#var:primerf|}}||<div class="contentin">No suggested primer sequences</div>|<div class="contentin bioseq">{{#var:primerf|}}</div>}}</div><br />
<div class="rowin"><div class="labelin">R: </div>{{#ifeq:{{#var:primerr|}}||<div class="contentin">No suggested primer sequences</div>|<div class="contentin bioseq">{{#var:primerr|}}</div>}}</div><br />
<div class="rowin"><div class="labelin">Band lengths: </div><div class="contentin">{{#ifeq:{{#var:pskipping|}}|||{{#var:pskipping|}}-{{#var:pinclusion|}}}}</div></div><br />
</div><br />
</div><br />
</div><br />
</div><br />
<div class="row"><br />
<div class="label small-6 large-4 columns">Annotated function<div class="submitfunction">[[EventFunction|(Submit a function)]]</div></div><br />
<div class="content small-6 large-8 columns">{{AnnotatedFunction|{{#var:id|}}|{{#var:genome|}}}}</div> <br />
</div><br />
</div><br />
<br /><br />
====GENOMIC CONTEXT====<br />
<div class="content large-12"><br />
<div style="float:right">{{HelpLinkedPage2|type=helpicon|msg=event-browser|output=data-tooltip}}</div><br />
</div><br />
<div class="browser-container genome-nor"><br />
{{#embedUCSC:chrom={{#var:chro_c|}}|start={{#var:start_c|}}|end={{#var:end_c|}}|genome_id={{#var:genome|}}}}</div><br />
====INCLUSION PATTERN====<br />
<div class="tissuevalue-list sample-chart">{{HelpLinkedPage2|type=helpicon|msg=event-tissuevalue|output=data-tooltip}}</div>{{#printCharts:}}<br />
<hr><br />
{{#specialImages:{{#var:id|}}|{{#var:genome|}}|AS_TCGA,AS_GTEX,AS_ASD_UCLA,AS_EARLY_DEV,AS_HEMATO_PREC,AS_MYOBLAST,AS_NEU_DIF,AS_SPERMATOG,AS_REPROGR_CARSTENS,AS_EARLY_DEV_MMU,AS_VICKY,AS_PANCREAS,AS_ABIOTIC,AS_BIOTIC,AS_LIGHT,AS_SPL_FACTORS|The Cancer Genome Atlas (TCGA),Genotype-Tissue Expression Project (GTEx),Autistic and control brains,Early development data (Chris),Hematopoietic precursors and cell types,Muscular differentiation time course,Neural differentiation time course,Spermatogenesis cell types,Reprogramming of fibroblasts to iPSCs,Early development data (Chris),Naive to Primed (Vicky),Pancreas cell types,Abiotic stress,Biotic stress,Light response,Splicing factor regulation|{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-tcga|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-gtex|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-asducla|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-earlydevhsa|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-hemato|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-myoblast|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-neudif|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-spermatogenesis|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-reprogr_carstens|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-earlydevmmu|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-vicky|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-pancreas|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-abiotic|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-biotic|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-light|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-spl_factors|output=data-tooltip}}}}<br />
<!--{{SpecialPSIDiv}}--><br />
{{Event Links|{{#var:genome}}|{{#var:gene_id}}|{{#var:gene_name}}}}<br />
{{PDBdiv|{{#var:genome|}}}}[[Category:Events]][[Category:Events in Genome:{{#var:genome|}}]]<nowiki /></includeonly></div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Template:Event2&diff=405
Template:Event2
2020-07-06T11:21:00Z
<p>WikiSysop: </p>
<hr />
<div><includeonly>__NOTOC__{{#vardefine:id|{{#cleanTag:{{{1}}}|at|pre}}}}{{#vardefine:genome|{{#cleanTag:{{{1}}}|pre}}}}{{BioDB_oldid|{{#var:id|}}|{{#var:genome|}}}}{{#vardefine:sub|{{#rmatch:{{#var:id}}|(\D+\d{4})|$1}}}}<nowiki />{{DISPLAYTITLE:{{#var:id|}}}}{{#CustomMsg:Help:Event.ini|ini}}<nowiki /><span id="molid" data-molid="{{{1}}}"></span><nowiki /><br />
''{{TypeEvent|{{PAGENAME}}}}''<nowiki />{{BioDB_event|{{#var:id|}}|{{#var:genome|}}}}<nowiki /><br />
{{BioDB_event_metrics|{{#var:id}}}}<nowiki /><br />
<div class="tablebox event-assembly"><br />
<div class="row"><div class="label small-6 large-4 columns">Gene</div><div class="content small-6 large-8 columns">{{#ifeq:{{#var:gene_id|}}||NA|[{{SERVER}}/gene/{{#var:gene_id|}}@{{#var:genome|}} {{#var:gene_id|}}]<br />
}}{{#ifeq:{{#var:gene_name|}}|||&nbsp;{{!}} ''{{#var:gene_name|}}'' }}</div></div><br />
<div class="row"><div class="label small-6 large-4 columns">Description</div><div class="content small-6 large-8 columns">{{#if:{{#var:description|}}|{{#var:description|}}|NA}}</div></div><br />
<div class="row"><div class="label small-6 large-4 columns">Coordinates</div><br />
<div class="content small-6 large-8 columns"><br />
<div class="block"><br />
<div class="head"><span class='genome-nor'>{{#var:chro_c|}}:{{#var:start_c|}}-{{#var:end_c|}}:{{#var:strand_c|}}</span>{{HelpLinkedPage2|type=helpicon|msg=event-coords|output=data-tooltip}}<span class="unfold up"></span></div><br />
<div class="body"><br />
<div class="rowin"><div class="labelin">Coord C1 exon</div><div class="contentin">{{#var:co_c1|}}</div></div><br />
<div class="rowin"><div class="labelin">Coord A exon</div><div class="contentin">{{#var:co_a|}}</div></div><br />
<div class="rowin"><div class="labelin">Coord C2 exon</div><div class="contentin">{{#var:co_c2|}}</div></div><br />
</div><br />
</div><br />
<br />
</div><br />
</div><br />
<div class="row"><div class="label small-6 large-4 columns">Length</div><div class="content small-6 large=8 columns">{{#var:length_n|}} bp{{HelpLinkedPage2|type=helpicon|msg=event-length|output=data-tooltip}}</div></div><br />
<div class="row"><div class="label small-6 large-4 columns">Sequences</div><br />
<div class="content small-6 large-8 columns"><br />
<div class="block"><br />
<div class="head"><span>Splice sites</span>{{HelpLinkedPage2|type=helpicon|msg=event-splice|output=data-tooltip}}<span class="unfold up"></span></div><br />
<div class="body"><br />
{{Score_SS|{{#var:id|}}|{{#var:genome|}}}}<br />
</div><br />
</div><br />
<div class="block"><br />
<div class="head"><span>Exon sequences</span>{{HelpLinkedPage2|type=helpicon|msg=event-exon|output=data-tooltip}}<span class="unfold down"></span></div><br />
<div class="body folded"><br />
<div class="rowin"><div class="labelin">Seq C1 exon</div>{{#var:seq_c1|}}</div><br />
<div class="rowin"><div class="labelin">Seq A exon</div>{{#var:seq_a|}}</div><br />
<div class="rowin"><div class="labelin">Seq C2 exon</div>{{#var:seq_c2|}}</div><br />
</div><br />
</div> <br />
</div><br />
</div><br />
<div class="row"><div class="label small-6 large-4 columns">VastDB Features</div>{{BioDB_mappability|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="content small-6 large-8 columns"><br />
<div class="block"><br />
<div class="head"><span>Vast-tools module Information</span>{{HelpLinkedPage2|type=helpicon|msg=event-vastdbfeatures|output=data-tooltip}}<span class="unfold down"></span></div><br />
<div class="body folded"><br />
<div class="rowin"><div class="labelin">Secondary ID</div><div class="contentin">{{#var:oldid|}}</div>{{HelpLinkedPage2|type=helpicon|msg=event-internal|output=data-tooltip}}</div><br />
<div class="rowin"><div class="labelin">Average complexity</div><div class="contentin">{{#var:complex|}}</div>{{HelpLinkedPage2|type=helpicon|msg=event-complexity|output=data-tooltip}}</div><br />
<div class="rowin"><div class="labelin">Mappability confidence:</div><div class="contentin">{{#ifeq:{{#var:minc|}}||NA|{{#var:minc|}}%={{#var:mexc1|}}={{#var:mexc2|}}%}}</div>{{HelpLinkedPage2|type=helpicon|msg=event-mappability|output=data-tooltip}}</div><br />
</div><br />
</div><br />
</div><br />
</div><br />
<div class="row"><div class="label small-6 large-4 columns">Protein Impact</div>{{BioDB_protimpact|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="content small-6 large-8 columns"><br />
<div class="">{{#var:protimpact|No protein impact description available}}{{HelpLinkedPage2|type=helpicon|msg=event-impact|output=data-tooltip}}<br />
</div>{{BioDB_protdisorder|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="block protimpact"><br />
<div class="head"><span>Features</span><br />
<span class="unfold up"></span></div><br />
<div class="body"><br />
<div class="rowin"><div class="labelin">Disorder rate (disopred):</div><div class="contentin">&nbsp;&nbsp;<span class="colorc1">C1</span>={{#var:c1dis|NA}} <span class="colora">A={{#var:adis|NA}}</span> <span class="colorc2">C2</span>={{#var:c2dis|NA}}</div> <br />
</div> <br />
<div class="rowin"><div class="labelin">Domain overlap (PFAM):</div><div class="contentin"><br />
<div class="block">{{BioDB_pfam|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="body"><br />
<div class="rowin"><div class="labelin colorc1">C1:</div><div class="contentin">{{#var:c1pfam|NA}}</div></div><br />
<div class="rowin"><div class="labelin colora">A:</div><div class="contentin">{{#var:apfam|NA}}</div></div><br />
<div class="rowin"><div class="labelin colorc2">C2:</div><div class="contentin">{{#var:c2pfam|NA}}</div></div><br />
</div><br />
</div><br />
</div></div><br />
<div class="rowin">{{#vardefine:isoid|{{#replace:{{#var:id}}|/|_}}}}<br />
{{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Incl_main}}<br />
<div class="labelin">Main Inclusion Isoform:</div><div class="contentin isoforms">{{#var:isoformid}}</div><br />
</div><br />
<div class="rowin"><br />
<div class="contentin domainimg">{{#ifeq:{{#vastDBFileExists:domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-INC.png}}|1|{{ExternalImgURL|{{SERVER}}/domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-INC.png|{{#var:isoid}}-INC}}|NA}}</div> <br />
</div><br />
<div class="rowin"><br />
{{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Excl_main}}<br />
<div class="labelin">Main Skipping Isoform:</div><div class="contentin isoforms">{{#var:isoformid}}</div><br />
</div><br />
<div class="rowin"><br />
<div class="contentin domainimg">{{#ifeq:{{#vastDBFileExists:domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-EXC.png}}|1|{{ExternalImgURL|{{SERVER}}/domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-EXC.png|{{#var:isoid}}-EXC}}|NA}}</div> <br />
</div><br />
<div class="rowin"><br />
{{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Incl_other}}<br />
<div class="labelin">Other Inclusion Isoforms:</div><div class="contentin isoforms">{{#var:isoformid}}</div> <br />
</div><br />
<div class="rowin"><br />
{{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Excl_other}}<br />
<div class="labelin">Other Skipping Isoforms:</div><div class="contentin isoforms">{{#var:isoformid}}</div> <br />
</div></div></div></div></div><br />
<div class="row"><div class="label small-6 large-4 columns">Associated events</div><div class="content small-6 large-8 columns">{{Associated2|{{#var:id|}}|{{#var:genome|}}}}{{HelpLinkedPage2|type=helpicon|msg=event-associated|output=data-tooltip}}</div><br />
</div>{{Event Other Assemblies|{{#var:id|}}|{{#var:genome|}}}}{{BioDB primer|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="row"><div class="label small-6 large-4 columns">Primers PCR</div><br />
<div class="content small-6 large-8 columns"><br />
<div class="block"><br />
<div class="head"><span>Suggestions for RT-PCR validation</span>{{HelpLinkedPage2|type=helpicon|msg=event-primers|output=data-tooltip}}<span class="unfold down"></span></div><br />
<div class="body folded"><br />
<div class="rowin"><div class="labelin">F: </div>{{#ifeq:{{#var:primerf|}}||<div class="contentin">No suggested primer sequences</div>|<div class="contentin bioseq">{{#var:primerf|}}</div>}}</div><br />
<div class="rowin"><div class="labelin">R: </div>{{#ifeq:{{#var:primerr|}}||<div class="contentin">No suggested primer sequences</div>|<div class="contentin bioseq">{{#var:primerr|}}</div>}}</div><br />
<div class="rowin"><div class="labelin">Band lengths: </div><div class="contentin">{{#ifeq:{{#var:pskipping|}}|||{{#var:pskipping|}}-{{#var:pinclusion|}}}}</div></div><br />
</div><br />
</div><br />
</div><br />
</div><br />
<div class="row"><br />
<div class="label small-6 large-4 columns">Annotated function<div class="submitfunction">[[EventFunction|(Submit a function)]]</div></div><br />
<div class="content small-6 large-8 columns">{{AnnotatedFunction|{{#var:id|}}|{{#var:genome|}}}}</div> <br />
</div><br />
</div><br />
<br /><br />
====GENOMIC CONTEXT====<br />
<div class="content large-12"><br />
<div style="float:right">{{HelpLinkedPage2|type=helpicon|msg=event-browser|output=data-tooltip}}</div><br />
</div><br />
<div class="browser-container genome-nor"><br />
{{#embedUCSC:chrom={{#var:chro_c|}}|start={{#var:start_c|}}|end={{#var:end_c|}}|genome_id={{#var:genome|}}}}</div><br />
====INCLUSION PATTERN====<br />
<div class="tissuevalue-list sample-chart">{{HelpLinkedPage2|type=helpicon|msg=event-tissuevalue|output=data-tooltip}}</div>{{#printCharts:}}<br />
<hr><br />
{{#specialImages:{{#var:id|}}|{{#var:genome|}}|AS_TCGA,AS_GTEX,AS_ASD_UCLA,AS_EARLY_DEV,AS_HEMATO_PREC,AS_MYOBLAST,AS_NEU_DIF,AS_SPERMATOG,AS_REPROGR_CARSTENS,AS_EARLY_DEV_MMU,AS_VICKY,AS_PANCREAS,AS_ABIOTIC,AS_BIOTIC,AS_LIGHT,AS_SPL_FACTORS|The Cancer Genome Atlas (TCGA),Genotype-Tissue Expression Project (GTEx),Autistic and control brains,Early development data (Chris),Hematopoietic precursors and cell types,Muscular differentiation time course,Neural differentiation time course,Spermatogenesis cell types,Reprogramming of fibroblasts to iPSCs,Early development data (Chris),Naive to Primed (Vicky),Pancreas cell types,Abiotic stress,Biotic stress,Light response,Splicing factor regulation|{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-tcga|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-gtex|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-asducla|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-earlydevhsa|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-hemato|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-myoblast|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-neudif|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-spermatogenesis|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-reprogr_carstens|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-earlydevmmu|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-vicky|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-pancreas|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-abiotic|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-biotic|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-light|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-spl_factors|output=data-tooltip}}}}<br />
<!--{{SpecialPSIDiv}}--><br />
{{Event Links|{{#var:genome}}|{{#var:gene_id}}|{{#var:gene_name}}}}<br />
{{PDBdiv|{{#var:genome|}}}}[[Category:Events]][[Category:Events in Genome:{{#var:genome|}}]]<nowiki /></includeonly></div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Template:Event2&diff=404
Template:Event2
2020-07-06T11:20:23Z
<p>WikiSysop: </p>
<hr />
<div><includeonly>__NOTOC__{{#vardefine:id|{{#cleanTag:{{{1}}}|at|pre}}}}{{#vardefine:genome|{{#cleanTag:{{{1}}}|pre}}}}{{BioDB_oldid|{{#var:id|}}|{{#var:genome|}}}}{{#vardefine:sub|{{#rmatch:{{#var:id}}|(\D+\d{4})|$1}}}}<nowiki />{{DISPLAYTITLE:{{#var:id|}}}}{{#CustomMsg:Help:Event.ini|ini}}<nowiki /><span id="molid" data-molid="{{{1}}}"></span><nowiki /><br />
''{{TypeEvent|{{PAGENAME}}}}''<nowiki />{{BioDB_event|{{#var:id|}}|{{#var:genome|}}}}<nowiki /><br />
{{BioDB_event_metrics|{{#var:id}}}}<nowiki /><br />
<div class="tablebox event-assembly"><br />
<div class="row"><div class="label small-6 large-4 columns">Gene</div><div class="content small-6 large-8 columns">{{#ifeq:{{#var:gene_id|}}||NA|[{{SERVER}}/gene/{{#var:gene_id|}}@{{#var:genome|}} {{#var:gene_id|}}]<br />
}}{{#ifeq:{{#var:gene_name|}}|||&nbsp;{{!}} ''{{#var:gene_name|}}'' }}</div></div><br />
<div class="row"><div class="label small-6 large-4 columns">Description</div><div class="content small-6 large-8 columns">{{#if:{{#var:description|}}|{{#var:description|}}|NA}}</div></div><br />
<div class="row"><div class="label small-6 large-4 columns">Coordinates</div><br />
<div class="content small-6 large-8 columns"><br />
<div class="block"><br />
<div class="head"><span class='genome-nor'>{{#var:chro_c|}}:{{#var:start_c|}}-{{#var:end_c|}}:{{#var:strand_c|}}</span>{{HelpLinkedPage2|type=helpicon|msg=event-coords|output=data-tooltip}}<span class="unfold up"></span></div><br />
<div class="body"><br />
<div class="rowin"><div class="labelin">Coord C1 exon</div><div class="contentin">{{#var:co_c1|}}</div></div><br />
<div class="rowin"><div class="labelin">Coord A exon</div><div class="contentin">{{#var:co_a|}}</div></div><br />
<div class="rowin"><div class="labelin">Coord C2 exon</div><div class="contentin">{{#var:co_c2|}}</div></div><br />
</div><br />
</div><br />
<br />
</div><br />
</div><br />
<div class="row"><div class="label small-6 large-4 columns">Length</div><div class="content small-6 large=8 columns">{{#var:length_n|}} bp{{HelpLinkedPage2|type=helpicon|msg=event-length|output=data-tooltip}}</div></div><br />
<div class="row"><div class="label small-6 large-4 columns">Sequences</div><br />
<div class="content small-6 large-8 columns"><br />
<div class="block"><br />
<div class="head"><span>Splice sites</span>{{HelpLinkedPage2|type=helpicon|msg=event-splice|output=data-tooltip}}<span class="unfold up"></span></div><br />
<div class="body"><br />
{{Score_SS|{{#var:id|}}|{{#var:genome|}}}}<br />
</div><br />
</div><br />
<div class="block"><br />
<div class="head"><span>Exon sequences</span>{{HelpLinkedPage2|type=helpicon|msg=event-exon|output=data-tooltip}}<span class="unfold down"></span></div><br />
<div class="body folded"><br />
<div class="rowin"><div class="labelin">Seq C1 exon</div>{{#var:seq_c1|}}</div><br />
<div class="rowin"><div class="labelin">Seq A exon</div>{{#var:seq_a|}}</div><br />
<div class="rowin"><div class="labelin">Seq C2 exon</div>{{#var:seq_c2|}}</div><br />
</div><br />
</div> <br />
</div><br />
</div><br />
<div class="row"><div class="label small-6 large-4 columns">VastDB Features</div>{{BioDB_mappability|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="content small-6 large-8 columns"><br />
<div class="block"><br />
<div class="head"><span>Vast-tools module Information</span>{{HelpLinkedPage2|type=helpicon|msg=event-vastdbfeatures|output=data-tooltip}}<span class="unfold down"></span></div><br />
<div class="body folded"><br />
<div class="rowin"><div class="labelin">Secondary ID</div><div class="contentin">{{#var:oldid|}}</div>{{HelpLinkedPage2|type=helpicon|msg=event-internal|output=data-tooltip}}</div><br />
<div class="rowin"><div class="labelin">Average complexity</div><div class="contentin">{{#var:complex|}}</div>{{HelpLinkedPage2|type=helpicon|msg=event-complexity|output=data-tooltip}}</div><br />
<div class="rowin"><div class="labelin">Mappability confidence:</div><div class="contentin">{{#ifeq:{{#var:minc|}}||NA|{{#var:minc|}}%={{#var:mexc1|}}={{#var:mexc2|}}%}}</div>{{HelpLinkedPage2|type=helpicon|msg=event-mappability|output=data-tooltip}}</div><br />
</div><br />
</div><br />
</div><br />
</div><br />
<div class="row"><div class="label small-6 large-4 columns">Protein Impact</div>{{BioDB_protimpact|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="content small-6 large-8 columns"><br />
<div class="">{{#var:protimpact|No protein impact description available}}{{HelpLinkedPage2|type=helpicon|msg=event-impact|output=data-tooltip}}<br />
</div>{{BioDB_protdisorder|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="block protimpact"><br />
<div class="head"><span>Features</span><br />
<span class="unfold up"></span></div><br />
<div class="body"><br />
<div class="rowin"><div class="labelin">Disorder rate (disopred):</div><div class="contentin">&nbsp;<span class="colorc1">C1</span>={{#var:c1dis|NA}} <span class="colora">A={{#var:adis|NA}}</span> <span class="colorc2">C2</span>={{#var:c2dis|NA}}</div> <br />
</div> <br />
<div class="rowin"><div class="labelin">Domain overlap (PFAM):</div><div class="contentin"><br />
<div class="block">{{BioDB_pfam|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="body"><br />
<div class="rowin"><div class="labelin colorc1">C1:</div><div class="contentin">{{#var:c1pfam|NA}}</div></div><br />
<div class="rowin"><div class="labelin colora">A:</div><div class="contentin">{{#var:apfam|NA}}</div></div><br />
<div class="rowin"><div class="labelin colorc2">C2:</div><div class="contentin">{{#var:c2pfam|NA}}</div></div><br />
</div><br />
</div><br />
</div></div><br />
<div class="rowin">{{#vardefine:isoid|{{#replace:{{#var:id}}|/|_}}}}<br />
{{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Incl_main}}<br />
<div class="labelin">Main Inclusion Isoform:</div><div class="contentin isoforms">{{#var:isoformid}}</div><br />
</div><br />
<div class="rowin"><br />
<div class="contentin domainimg">{{#ifeq:{{#vastDBFileExists:domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-INC.png}}|1|{{ExternalImgURL|{{SERVER}}/domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-INC.png|{{#var:isoid}}-INC}}|NA}}</div> <br />
</div><br />
<div class="rowin"><br />
{{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Excl_main}}<br />
<div class="labelin">Main Skipping Isoform:</div><div class="contentin isoforms">{{#var:isoformid}}</div><br />
</div><br />
<div class="rowin"><br />
<div class="contentin domainimg">{{#ifeq:{{#vastDBFileExists:domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-EXC.png}}|1|{{ExternalImgURL|{{SERVER}}/domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-EXC.png|{{#var:isoid}}-EXC}}|NA}}</div> <br />
</div><br />
<div class="rowin"><br />
{{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Incl_other}}<br />
<div class="labelin">Other Inclusion Isoforms:</div><div class="contentin isoforms">{{#var:isoformid}}</div> <br />
</div><br />
<div class="rowin"><br />
{{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Excl_other}}<br />
<div class="labelin">Other Skipping Isoforms:</div><div class="contentin isoforms">{{#var:isoformid}}</div> <br />
</div></div></div></div></div><br />
<div class="row"><div class="label small-6 large-4 columns">Associated events</div><div class="content small-6 large-8 columns">{{Associated2|{{#var:id|}}|{{#var:genome|}}}}{{HelpLinkedPage2|type=helpicon|msg=event-associated|output=data-tooltip}}</div><br />
</div>{{Event Other Assemblies|{{#var:id|}}|{{#var:genome|}}}}{{BioDB primer|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="row"><div class="label small-6 large-4 columns">Primers PCR</div><br />
<div class="content small-6 large-8 columns"><br />
<div class="block"><br />
<div class="head"><span>Suggestions for RT-PCR validation</span>{{HelpLinkedPage2|type=helpicon|msg=event-primers|output=data-tooltip}}<span class="unfold down"></span></div><br />
<div class="body folded"><br />
<div class="rowin"><div class="labelin">F: </div>{{#ifeq:{{#var:primerf|}}||<div class="contentin">No suggested primer sequences</div>|<div class="contentin bioseq">{{#var:primerf|}}</div>}}</div><br />
<div class="rowin"><div class="labelin">R: </div>{{#ifeq:{{#var:primerr|}}||<div class="contentin">No suggested primer sequences</div>|<div class="contentin bioseq">{{#var:primerr|}}</div>}}</div><br />
<div class="rowin"><div class="labelin">Band lengths: </div><div class="contentin">{{#ifeq:{{#var:pskipping|}}|||{{#var:pskipping|}}-{{#var:pinclusion|}}}}</div></div><br />
</div><br />
</div><br />
</div><br />
</div><br />
<div class="row"><br />
<div class="label small-6 large-4 columns">Annotated function<div class="submitfunction">[[EventFunction|(Submit a function)]]</div></div><br />
<div class="content small-6 large-8 columns">{{AnnotatedFunction|{{#var:id|}}|{{#var:genome|}}}}</div> <br />
</div><br />
</div><br />
<br /><br />
====GENOMIC CONTEXT====<br />
<div class="content large-12"><br />
<div style="float:right">{{HelpLinkedPage2|type=helpicon|msg=event-browser|output=data-tooltip}}</div><br />
</div><br />
<div class="browser-container genome-nor"><br />
{{#embedUCSC:chrom={{#var:chro_c|}}|start={{#var:start_c|}}|end={{#var:end_c|}}|genome_id={{#var:genome|}}}}</div><br />
====INCLUSION PATTERN====<br />
<div class="tissuevalue-list sample-chart">{{HelpLinkedPage2|type=helpicon|msg=event-tissuevalue|output=data-tooltip}}</div>{{#printCharts:}}<br />
<hr><br />
{{#specialImages:{{#var:id|}}|{{#var:genome|}}|AS_TCGA,AS_GTEX,AS_ASD_UCLA,AS_EARLY_DEV,AS_HEMATO_PREC,AS_MYOBLAST,AS_NEU_DIF,AS_SPERMATOG,AS_REPROGR_CARSTENS,AS_EARLY_DEV_MMU,AS_VICKY,AS_PANCREAS,AS_ABIOTIC,AS_BIOTIC,AS_LIGHT,AS_SPL_FACTORS|The Cancer Genome Atlas (TCGA),Genotype-Tissue Expression Project (GTEx),Autistic and control brains,Early development data (Chris),Hematopoietic precursors and cell types,Muscular differentiation time course,Neural differentiation time course,Spermatogenesis cell types,Reprogramming of fibroblasts to iPSCs,Early development data (Chris),Naive to Primed (Vicky),Pancreas cell types,Abiotic stress,Biotic stress,Light response,Splicing factor regulation|{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-tcga|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-gtex|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-asducla|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-earlydevhsa|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-hemato|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-myoblast|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-neudif|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-spermatogenesis|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-reprogr_carstens|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-earlydevmmu|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-vicky|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-pancreas|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-abiotic|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-biotic|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-light|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-spl_factors|output=data-tooltip}}}}<br />
<!--{{SpecialPSIDiv}}--><br />
{{Event Links|{{#var:genome}}|{{#var:gene_id}}|{{#var:gene_name}}}}<br />
{{PDBdiv|{{#var:genome|}}}}[[Category:Events]][[Category:Events in Genome:{{#var:genome|}}]]<nowiki /></includeonly></div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Template:Event2&diff=403
Template:Event2
2020-07-06T11:09:54Z
<p>WikiSysop: </p>
<hr />
<div><includeonly>__NOTOC__{{#vardefine:id|{{#cleanTag:{{{1}}}|at|pre}}}}{{#vardefine:genome|{{#cleanTag:{{{1}}}|pre}}}}{{BioDB_oldid|{{#var:id|}}|{{#var:genome|}}}}{{#vardefine:sub|{{#rmatch:{{#var:id}}|(\D+\d{4})|$1}}}}<nowiki />{{DISPLAYTITLE:{{#var:id|}}}}{{#CustomMsg:Help:Event.ini|ini}}<nowiki /><span id="molid" data-molid="{{{1}}}"></span><nowiki /><br />
''{{TypeEvent|{{PAGENAME}}}}''<nowiki />{{BioDB_event|{{#var:id|}}|{{#var:genome|}}}}<nowiki /><br />
{{BioDB_event_metrics|{{#var:id}}}}<nowiki /><br />
<div class="tablebox event-assembly"><br />
<div class="row"><div class="label small-6 large-4 columns">Gene</div><div class="content small-6 large-8 columns">{{#ifeq:{{#var:gene_id|}}||NA|[{{SERVER}}/gene/{{#var:gene_id|}}@{{#var:genome|}} {{#var:gene_id|}}]<br />
}}{{#ifeq:{{#var:gene_name|}}|||&nbsp;{{!}} ''{{#var:gene_name|}}'' }}</div></div><br />
<div class="row"><div class="label small-6 large-4 columns">Description</div><div class="content small-6 large-8 columns">{{#if:{{#var:description|}}|{{#var:description|}}|NA}}</div></div><br />
<div class="row"><div class="label small-6 large-4 columns">Coordinates</div><br />
<div class="content small-6 large-8 columns"><br />
<div class="block"><br />
<div class="head"><span class='genome-nor'>{{#var:chro_c|}}:{{#var:start_c|}}-{{#var:end_c|}}:{{#var:strand_c|}}</span>{{HelpLinkedPage2|type=helpicon|msg=event-coords|output=data-tooltip}}<span class="unfold up"></span></div><br />
<div class="body"><br />
<div class="rowin"><div class="labelin">Coord C1 exon</div><div class="contentin">{{#var:co_c1|}}</div></div><br />
<div class="rowin"><div class="labelin">Coord A exon</div><div class="contentin">{{#var:co_a|}}</div></div><br />
<div class="rowin"><div class="labelin">Coord C2 exon</div><div class="contentin">{{#var:co_c2|}}</div></div><br />
</div><br />
</div><br />
<br />
</div><br />
</div><br />
<div class="row"><div class="label small-6 large-4 columns">Length</div><div class="content small-6 large=8 columns">{{#var:length_n|}} bp{{HelpLinkedPage2|type=helpicon|msg=event-length|output=data-tooltip}}</div></div><br />
<div class="row"><div class="label small-6 large-4 columns">Sequences</div><br />
<div class="content small-6 large-8 columns"><br />
<div class="block"><br />
<div class="head"><span>Splice sites</span>{{HelpLinkedPage2|type=helpicon|msg=event-splice|output=data-tooltip}}<span class="unfold up"></span></div><br />
<div class="body"><br />
{{Score_SS|{{#var:id|}}|{{#var:genome|}}}}<br />
</div><br />
</div><br />
<div class="block"><br />
<div class="head"><span>Exon sequences</span>{{HelpLinkedPage2|type=helpicon|msg=event-exon|output=data-tooltip}}<span class="unfold down"></span></div><br />
<div class="body folded"><br />
<div class="rowin"><div class="labelin">Seq C1 exon</div>{{#var:seq_c1|}}</div><br />
<div class="rowin"><div class="labelin">Seq A exon</div>{{#var:seq_a|}}</div><br />
<div class="rowin"><div class="labelin">Seq C2 exon</div>{{#var:seq_c2|}}</div><br />
</div><br />
</div> <br />
</div><br />
</div><br />
<div class="row"><div class="label small-6 large-4 columns">VastDB Features</div>{{BioDB_mappability|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="content small-6 large-8 columns"><br />
<div class="block"><br />
<div class="head"><span>Vast-tools module Information</span>{{HelpLinkedPage2|type=helpicon|msg=event-vastdbfeatures|output=data-tooltip}}<span class="unfold down"></span></div><br />
<div class="body folded"><br />
<div class="rowin"><div class="labelin">Secondary ID</div><div class="contentin">{{#var:oldid|}}</div>{{HelpLinkedPage2|type=helpicon|msg=event-internal|output=data-tooltip}}</div><br />
<div class="rowin"><div class="labelin">Average complexity</div><div class="contentin">{{#var:complex|}}</div>{{HelpLinkedPage2|type=helpicon|msg=event-complexity|output=data-tooltip}}</div><br />
<div class="rowin"><div class="labelin">Mappability confidence:</div><div class="contentin">{{#ifeq:{{#var:minc|}}||NA|{{#var:minc|}}%={{#var:mexc1|}}={{#var:mexc2|}}%}}</div>{{HelpLinkedPage2|type=helpicon|msg=event-mappability|output=data-tooltip}}</div><br />
</div><br />
</div><br />
</div><br />
</div><br />
<div class="row"><div class="label small-6 large-4 columns">Protein Impact</div>{{BioDB_protimpact|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="content small-6 large-8 columns"><br />
<div class="">{{#var:protimpact|No protein impact description available}}{{HelpLinkedPage2|type=helpicon|msg=event-impact|output=data-tooltip}}<br />
</div>{{BioDB_protdisorder|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="block protimpact"><br />
<div class="head"><span>Features</span><br />
<span class="unfold up"></span></div><br />
<div class="body"><br />
<div class="rowin"><div class="labelin">Disorder rate (disopred):</div><div class="contentin"><span class="colorc1">C1</span>={{#var:c1dis|NA}} <span class="colora">A={{#var:adis|NA}}</span> <span class="colorc2">C2</span>={{#var:c2dis|NA}}</div> <br />
</div> <br />
<div class="rowin"><div class="labelin">Domain overlap (PFAM):</div><div class="contentin"><br />
<div class="block">{{BioDB_pfam|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="body"><br />
<div class="rowin"><div class="labelin colorc1">C1:</div><div class="contentin">{{#var:c1pfam|NA}}</div></div><br />
<div class="rowin"><div class="labelin colora">A:</div><div class="contentin">{{#var:apfam|NA}}</div></div><br />
<div class="rowin"><div class="labelin colorc2">C2:</div><div class="contentin">{{#var:c2pfam|NA}}</div></div><br />
</div><br />
</div><br />
</div></div><br />
<div class="rowin">{{#vardefine:isoid|{{#replace:{{#var:id}}|/|_}}}}<br />
{{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Incl_main}}<br />
<div class="labelin">Main Inclusion Isoform:</div><div class="contentin isoforms">{{#var:isoformid}}</div><br />
</div><br />
<div class="rowin"><br />
<div class="contentin domainimg">{{#ifeq:{{#vastDBFileExists:domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-INC.png}}|1|{{ExternalImgURL|{{SERVER}}/domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-INC.png|{{#var:isoid}}-INC}}|NA}}</div> <br />
</div><br />
<div class="rowin"><br />
{{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Excl_main}}<br />
<div class="labelin">Main Skipping Isoform:</div><div class="contentin isoforms">{{#var:isoformid}}</div><br />
</div><br />
<div class="rowin"><br />
<div class="contentin domainimg">{{#ifeq:{{#vastDBFileExists:domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-EXC.png}}|1|{{ExternalImgURL|{{SERVER}}/domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-EXC.png|{{#var:isoid}}-EXC}}|NA}}</div> <br />
</div><br />
<div class="rowin"><br />
{{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Incl_other}}<br />
<div class="labelin">Other Inclusion Isoforms:</div><div class="contentin isoforms">{{#var:isoformid}}</div> <br />
</div><br />
<div class="rowin"><br />
{{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Excl_other}}<br />
<div class="labelin">Other Skipping Isoforms:</div><div class="contentin isoforms">{{#var:isoformid}}</div> <br />
</div></div></div></div></div><br />
<div class="row"><div class="label small-6 large-4 columns">Associated events</div><div class="content small-6 large-8 columns">{{Associated2|{{#var:id|}}|{{#var:genome|}}}}{{HelpLinkedPage2|type=helpicon|msg=event-associated|output=data-tooltip}}</div><br />
</div>{{Event Other Assemblies|{{#var:id|}}|{{#var:genome|}}}}{{BioDB primer|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="row"><div class="label small-6 large-4 columns">Primers PCR</div><br />
<div class="content small-6 large-8 columns"><br />
<div class="block"><br />
<div class="head"><span>Suggestions for RT-PCR validation</span>{{HelpLinkedPage2|type=helpicon|msg=event-primers|output=data-tooltip}}<span class="unfold down"></span></div><br />
<div class="body folded"><br />
<div class="rowin"><div class="labelin">F: </div>{{#ifeq:{{#var:primerf|}}||<div class="contentin">No suggested primer sequences</div>|<div class="contentin bioseq">{{#var:primerf|}}</div>}}</div><br />
<div class="rowin"><div class="labelin">R: </div>{{#ifeq:{{#var:primerr|}}||<div class="contentin">No suggested primer sequences</div>|<div class="contentin bioseq">{{#var:primerr|}}</div>}}</div><br />
<div class="rowin"><div class="labelin">Band lengths: </div><div class="contentin">{{#ifeq:{{#var:pskipping|}}|||{{#var:pskipping|}}-{{#var:pinclusion|}}}}</div></div><br />
</div><br />
</div><br />
</div><br />
</div><br />
<div class="row"><br />
<div class="label small-6 large-4 columns">Annotated function<div class="submitfunction">[[EventFunction|(Submit a function)]]</div></div><br />
<div class="content small-6 large-8 columns">{{AnnotatedFunction|{{#var:id|}}|{{#var:genome|}}}}</div> <br />
</div><br />
</div><br />
<br /><br />
====GENOMIC CONTEXT====<br />
<div class="content large-12"><br />
<div style="float:right">{{HelpLinkedPage2|type=helpicon|msg=event-browser|output=data-tooltip}}</div><br />
</div><br />
<div class="browser-container genome-nor"><br />
{{#embedUCSC:chrom={{#var:chro_c|}}|start={{#var:start_c|}}|end={{#var:end_c|}}|genome_id={{#var:genome|}}}}</div><br />
====INCLUSION PATTERN====<br />
<div class="tissuevalue-list sample-chart">{{HelpLinkedPage2|type=helpicon|msg=event-tissuevalue|output=data-tooltip}}</div>{{#printCharts:}}<br />
<hr><br />
{{#specialImages:{{#var:id|}}|{{#var:genome|}}|AS_TCGA,AS_GTEX,AS_ASD_UCLA,AS_EARLY_DEV,AS_HEMATO_PREC,AS_MYOBLAST,AS_NEU_DIF,AS_SPERMATOG,AS_REPROGR_CARSTENS,AS_EARLY_DEV_MMU,AS_VICKY,AS_PANCREAS,AS_ABIOTIC,AS_BIOTIC,AS_LIGHT,AS_SPL_FACTORS|The Cancer Genome Atlas (TCGA),Genotype-Tissue Expression Project (GTEx),Autistic and control brains,Early development data (Chris),Hematopoietic precursors and cell types,Muscular differentiation time course,Neural differentiation time course,Spermatogenesis cell types,Reprogramming of fibroblasts to iPSCs,Early development data (Chris),Naive to Primed (Vicky),Pancreas cell types,Abiotic stress,Biotic stress,Light response,Splicing factor regulation|{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-tcga|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-gtex|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-asducla|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-earlydevhsa|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-hemato|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-myoblast|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-neudif|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-spermatogenesis|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-reprogr_carstens|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-earlydevmmu|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-vicky|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-pancreas|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-abiotic|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-biotic|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-light|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-spl_factors|output=data-tooltip}}}}<br />
<!--{{SpecialPSIDiv}}--><br />
{{Event Links|{{#var:genome}}|{{#var:gene_id}}|{{#var:gene_name}}}}<br />
{{PDBdiv|{{#var:genome|}}}}[[Category:Events]][[Category:Events in Genome:{{#var:genome|}}]]<nowiki /></includeonly></div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Template:Event2&diff=402
Template:Event2
2020-07-06T11:04:54Z
<p>WikiSysop: </p>
<hr />
<div><includeonly>__NOTOC__{{#vardefine:id|{{#cleanTag:{{{1}}}|at|pre}}}}{{#vardefine:genome|{{#cleanTag:{{{1}}}|pre}}}}{{BioDB_oldid|{{#var:id|}}|{{#var:genome|}}}}{{#vardefine:sub|{{#rmatch:{{#var:id}}|(\D+\d{4})|$1}}}}<nowiki />{{DISPLAYTITLE:{{#var:id|}}}}{{#CustomMsg:Help:Event.ini|ini}}<nowiki /><span id="molid" data-molid="{{{1}}}"></span><nowiki /><br />
''{{TypeEvent|{{PAGENAME}}}}''<nowiki />{{BioDB_event|{{#var:id|}}|{{#var:genome|}}}}<nowiki /><br />
{{BioDB_event_metrics|{{#var:id}}}}<nowiki /><br />
<div class="tablebox event-assembly"><br />
<div class="row"><div class="label small-6 large-4 columns">Gene</div><div class="content small-6 large-8 columns">{{#ifeq:{{#var:gene_id|}}||NA|[{{SERVER}}/gene/{{#var:gene_id|}}@{{#var:genome|}} {{#var:gene_id|}}]<br />
}}{{#ifeq:{{#var:gene_name|}}|||&nbsp;{{!}} ''{{#var:gene_name|}}'' }}</div></div><br />
<div class="row"><div class="label small-6 large-4 columns">Description</div><div class="content small-6 large-8 columns">{{#if:{{#var:description|}}|{{#var:description|}}|NA}}</div></div><br />
<div class="row"><div class="label small-6 large-4 columns">Coordinates</div><br />
<div class="content small-6 large-8 columns"><br />
<div class="block"><br />
<div class="head"><span class='genome-nor'>{{#var:chro_c|}}:{{#var:start_c|}}-{{#var:end_c|}}:{{#var:strand_c|}}</span>{{HelpLinkedPage2|type=helpicon|msg=event-coords|output=data-tooltip}}<span class="unfold up"></span></div><br />
<div class="body"><br />
<div class="rowin"><div class="labelin">Coord C1 exon</div><div class="contentin">{{#var:co_c1|}}</div></div><br />
<div class="rowin"><div class="labelin">Coord A exon</div><div class="contentin">{{#var:co_a|}}</div></div><br />
<div class="rowin"><div class="labelin">Coord C2 exon</div><div class="contentin">{{#var:co_c2|}}</div></div><br />
</div><br />
</div><br />
<br />
</div><br />
</div><br />
<div class="row"><div class="label small-6 large-4 columns">Length</div><div class="content small-6 large=8 columns">{{#var:length_n|}} bp{{HelpLinkedPage2|type=helpicon|msg=event-length|output=data-tooltip}}</div></div><br />
<div class="row"><div class="label small-6 large-4 columns">Sequences</div><br />
<div class="content small-6 large-8 columns"><br />
<div class="block"><br />
<div class="head"><span>Splice sites</span>{{HelpLinkedPage2|type=helpicon|msg=event-splice|output=data-tooltip}}<span class="unfold up"></span></div><br />
<div class="body"><br />
{{Score_SS|{{#var:id|}}|{{#var:genome|}}}}<br />
</div><br />
</div><br />
<div class="block"><br />
<div class="head"><span>Exon sequences</span>{{HelpLinkedPage2|type=helpicon|msg=event-exon|output=data-tooltip}}<span class="unfold down"></span></div><br />
<div class="body folded"><br />
<div class="rowin"><div class="labelin">Seq C1 exon</div>{{#var:seq_c1|}}</div><br />
<div class="rowin"><div class="labelin">Seq A exon</div>{{#var:seq_a|}}</div><br />
<div class="rowin"><div class="labelin">Seq C2 exon</div>{{#var:seq_c2|}}</div><br />
</div><br />
</div> <br />
</div><br />
</div><br />
<div class="row"><div class="label small-6 large-4 columns">VastDB Features</div>{{BioDB_mappability|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="content small-6 large-8 columns"><br />
<div class="block"><br />
<div class="head"><span>Vast-tools module Information</span>{{HelpLinkedPage2|type=helpicon|msg=event-vastdbfeatures|output=data-tooltip}}<span class="unfold down"></span></div><br />
<div class="body folded"><br />
<div class="rowin"><div class="labelin">Secondary ID</div><div class="contentin">{{#var:oldid|}}</div>{{HelpLinkedPage2|type=helpicon|msg=event-internal|output=data-tooltip}}</div><br />
<div class="rowin"><div class="labelin">Average complexity</div><div class="contentin">{{#var:complex|}}</div>{{HelpLinkedPage2|type=helpicon|msg=event-complexity|output=data-tooltip}}</div><br />
<div class="rowin"><div class="labelin">Mappability confidence:</div><div class="contentin">{{#ifeq:{{#var:minc|}}||NA|{{#var:minc|}}%={{#var:mexc1|}}={{#var:mexc2|}}%}}</div>{{HelpLinkedPage2|type=helpicon|msg=event-mappability|output=data-tooltip}}</div><br />
</div><br />
</div><br />
</div><br />
</div><br />
<div class="row"><div class="label small-6 large-4 columns">Protein Impact</div>{{BioDB_protimpact|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="content small-6 large-8 columns"><br />
<div class="">{{#var:protimpact|No protein impact description available}}{{HelpLinkedPage2|type=helpicon|msg=event-impact|output=data-tooltip}}<br />
</div>{{BioDB_protdisorder|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="block protimpact"><br />
<div class="head"><span>Features</span><br />
<span class="unfold up"></span></div><br />
<div class="body"><br />
<div class="rowin"><div class="labelin">Disorder rate (disopred):</div><div class="contentin">C1={{#var:c1dis|NA}} A={{#var:adis|NA}} C2={{#var:c2dis|NA}}</div> <br />
</div> <br />
<div class="rowin"><div class="labelin">Domain overlap (PFAM):</div><div class="contentin"><br />
<div class="block">{{BioDB_pfam|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="body"><br />
<div class="rowin"><div class="labelin">C1:</div><div class="contentin">{{#var:c1pfam|NA}}</div></div><br />
<div class="rowin"><div class="labelin">A:</div><div class="contentin">{{#var:apfam|NA}}</div></div><br />
<div class="rowin"><div class="labelin">C2:</div><div class="contentin">{{#var:c2pfam|NA}}</div></div><br />
</div><br />
</div><br />
</div></div><br />
<div class="rowin">{{#vardefine:isoid|{{#replace:{{#var:id}}|/|_}}}}<br />
{{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Incl_main}}<br />
<div class="labelin">Main Inclusion Isoform:</div><div class="contentin isoforms">{{#var:isoformid}}</div><br />
</div><br />
<div class="rowin"><br />
<div class="contentin domainimg">{{#ifeq:{{#vastDBFileExists:domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-INC.png}}|1|{{ExternalImgURL|{{SERVER}}/domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-INC.png|{{#var:isoid}}-INC}}|NA}}</div> <br />
</div><br />
<div class="rowin"><br />
{{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Excl_main}}<br />
<div class="contentin">Main Skipping Isoform:</div><div class="contentin isoforms">{{#var:isoformid}}</div><br />
</div><br />
<div class="rowin"><br />
<div class="contentin domainimg">{{#ifeq:{{#vastDBFileExists:domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-EXC.png}}|1|{{ExternalImgURL|{{SERVER}}/domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-EXC.png|{{#var:isoid}}-EXC}}|NA}}</div> <br />
</div><br />
<div class="rowin"><br />
{{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Incl_other}}<br />
<div class="labelin">Other Inclusion Isoforms:</div><div class="contentin isoforms">{{#var:isoformid}}</div> <br />
</div><br />
<div class="rowin"><br />
{{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Excl_other}}<br />
<div class="labelin">Other Skipping Isoforms:</div><div class="contentin isoforms">{{#var:isoformid}}</div> <br />
</div></div></div></div></div><br />
<div class="row"><div class="label small-6 large-4 columns">Associated events</div><div class="content small-6 large-8 columns">{{Associated2|{{#var:id|}}|{{#var:genome|}}}}{{HelpLinkedPage2|type=helpicon|msg=event-associated|output=data-tooltip}}</div><br />
</div>{{Event Other Assemblies|{{#var:id|}}|{{#var:genome|}}}}{{BioDB primer|{{#var:id|}}|{{#var:genome|}}}}<br />
<div class="row"><div class="label small-6 large-4 columns">Primers PCR</div><br />
<div class="content small-6 large-8 columns"><br />
<div class="block"><br />
<div class="head"><span>Suggestions for RT-PCR validation</span>{{HelpLinkedPage2|type=helpicon|msg=event-primers|output=data-tooltip}}<span class="unfold down"></span></div><br />
<div class="body folded"><br />
<div class="rowin"><div class="labelin">F: </div>{{#ifeq:{{#var:primerf|}}||<div class="contentin">No suggested primer sequences</div>|<div class="contentin bioseq">{{#var:primerf|}}</div>}}</div><br />
<div class="rowin"><div class="labelin">R: </div>{{#ifeq:{{#var:primerr|}}||<div class="contentin">No suggested primer sequences</div>|<div class="contentin bioseq">{{#var:primerr|}}</div>}}</div><br />
<div class="rowin"><div class="labelin">Band lengths: </div><div class="contentin">{{#ifeq:{{#var:pskipping|}}|||{{#var:pskipping|}}-{{#var:pinclusion|}}}}</div></div><br />
</div><br />
</div><br />
</div><br />
</div><br />
<div class="row"><br />
<div class="label small-6 large-4 columns">Annotated function<div class="submitfunction">[[EventFunction|(Submit a function)]]</div></div><br />
<div class="content small-6 large-8 columns">{{AnnotatedFunction|{{#var:id|}}|{{#var:genome|}}}}</div> <br />
</div><br />
</div><br />
<br /><br />
====GENOMIC CONTEXT====<br />
<div class="content large-12"><br />
<div style="float:right">{{HelpLinkedPage2|type=helpicon|msg=event-browser|output=data-tooltip}}</div><br />
</div><br />
<div class="browser-container genome-nor"><br />
{{#embedUCSC:chrom={{#var:chro_c|}}|start={{#var:start_c|}}|end={{#var:end_c|}}|genome_id={{#var:genome|}}}}</div><br />
====INCLUSION PATTERN====<br />
<div class="tissuevalue-list sample-chart">{{HelpLinkedPage2|type=helpicon|msg=event-tissuevalue|output=data-tooltip}}</div>{{#printCharts:}}<br />
<hr><br />
{{#specialImages:{{#var:id|}}|{{#var:genome|}}|AS_TCGA,AS_GTEX,AS_ASD_UCLA,AS_EARLY_DEV,AS_HEMATO_PREC,AS_MYOBLAST,AS_NEU_DIF,AS_SPERMATOG,AS_REPROGR_CARSTENS,AS_EARLY_DEV_MMU,AS_VICKY,AS_PANCREAS,AS_ABIOTIC,AS_BIOTIC,AS_LIGHT,AS_SPL_FACTORS|The Cancer Genome Atlas (TCGA),Genotype-Tissue Expression Project (GTEx),Autistic and control brains,Early development data (Chris),Hematopoietic precursors and cell types,Muscular differentiation time course,Neural differentiation time course,Spermatogenesis cell types,Reprogramming of fibroblasts to iPSCs,Early development data (Chris),Naive to Primed (Vicky),Pancreas cell types,Abiotic stress,Biotic stress,Light response,Splicing factor regulation|{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-tcga|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-gtex|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-asducla|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-earlydevhsa|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-hemato|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-myoblast|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-neudif|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-spermatogenesis|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-reprogr_carstens|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-earlydevmmu|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-vicky|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-pancreas|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-abiotic|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-biotic|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-light|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-spl_factors|output=data-tooltip}}}}<br />
<!--{{SpecialPSIDiv}}--><br />
{{Event Links|{{#var:genome}}|{{#var:gene_id}}|{{#var:gene_name}}}}<br />
{{PDBdiv|{{#var:genome|}}}}[[Category:Events]][[Category:Events in Genome:{{#var:genome|}}]]<nowiki /></includeonly></div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Genes&diff=401
Genes
2020-07-02T16:29:45Z
<p>WikiSysop: </p>
<hr />
<div>{{#CouchDB_Query_field:tag=select|query=AND genome:$1|values=,araTha10|id=genome-select|default={{#urldecode:{{#urlget:genome|}}}}}}<br />
{{#CouchDB_Query_table:type=couchdb-lucene-query|full=true|index=text|db={{#getCouchDBinstance:}}|query=(id:$1* OR name:$1* OR desc:$1*)|text={{#urlget:query|}}|header=Gene id,Gene symbol,Coords,Assembly|fields=#id,name,coords,#genome|prefixurl=id:/gene/,genome:/assembly/|extra=#genome-select}}</div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Events&diff=400
Events
2020-07-02T16:29:02Z
<p>WikiSysop: </p>
<hr />
<div>{{#CouchDB_Query_field:tag=select|query=AND genome:$1|values=,araTha10|id=genome-select|default={{#urldecode:{{#urlget:genome|}}}}}}<br />
{{#CouchDB_Query_table:type=couchdb-lucene-query|full=true|index=textevents|db={{#getCouchDBinstance:}}|query=(id:$1* OR name:$1* OR geneid:$1* OR desc:$1*)|text={{#urlget:query|}}|header=Event id,Gene id,Gene name,Coords,Length,Assembly|fields=#id,geneid,name,coords,length,#genome|prefixurl=id:/event/,genome:/assembly/|extra=#genome-select}}</div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Search&diff=396
Search
2020-07-02T15:35:00Z
<p>WikiSysop: </p>
<hr />
<div>{{#CouchDB_Query_field:tag=select|query=AND class:$1|values=,Gene,Event|id=class-select|default={{#urldecode:{{#urlget:type|}}}}}}<br />
{{#CouchDB_Query_table:type=couchdb-lucene-query|limit=25|index=desc|db={{#getCouchDBinstance:}}|full=true|query=(id:$1* OR name:$1* OR desc:$1*)|text={{#urlget:query|}}|header=Id,Name,Type,Description,Coords,Length,Assembly|fields=#id,name,class,desc,coords,length,#genome|prefixcondurl=id:class@Gene=/gene/,id:class@Event=/event/|prefixurl=genome:/assembly/|extra=#class-select}}</div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Search&diff=395
Search
2020-07-02T15:32:16Z
<p>WikiSysop: </p>
<hr />
<div>{{#CouchDB_Query_field:tag=select|query=AND class:$1|values=,Gene,Event|id=class-select|default={{#urldecode:{{#urlget:type|}}}}}}<br />
{{#CouchDB_Query_table:type=couchdb-lucene-query|limit=1000|index=desc|db={{#getCouchDBinstance:}}|full=true|query=(id:$1* OR name:$1* OR desc:$1*)|text={{#urlget:query|}}|header=Id,Name,Type,Description,Coords,Length,Assembly|fields=#id,name,class,desc,coords,length,#genome|prefixcondurl=id:class@Gene=/gene/,id:class@Event=/event/|prefixurl=genome:/assembly/|extra=#class-select}}</div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Search&diff=394
Search
2020-07-02T15:29:50Z
<p>WikiSysop: </p>
<hr />
<div>{{#CouchDB_Query_field:tag=select|query=AND class:$1|values=,Gene,Event|id=class-select|default={{#urldecode:{{#urlget:type|}}}}}}<br />
{{#CouchDB_Query_table:type=couchdb-lucene-query|index=desc|db={{#getCouchDBinstance:}}|full=true|query=(id:$1* OR name:$1* OR desc:$1*)|text={{#urlget:query|}}|header=Id,Name,Type,Description,Coords,Length,Assembly|fields=#id,name,class,desc,coords,length,#genome|prefixcondurl=id:class@Gene=/gene/,id:class@Event=/event/|prefixurl=genome:/assembly/|extra=#class-select}}</div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Search&diff=393
Search
2020-07-02T15:24:48Z
<p>WikiSysop: </p>
<hr />
<div>{{#CouchDB_Query_field:tag=select|query=AND class:$1|values=,Gene,Event|id=class-select|default={{#urldecode:{{#urlget:type|}}}}}}<br />
{{#CouchDB_Query_table:type=couchdb-lucene-query|limit=1000|index=desc|db={{#getCouchDBinstance:}}|full=true|query=(id:$1* OR name:$1* OR desc:$1*)|text={{#urlget:query|}}|header=Id,Name,Type,Description,Coords,Length,Assembly|fields=#id,name,class,desc,coords,length,#genome|prefixcondurl=id:class@Gene=/gene/,id:class@Event=/event/|prefixurl=genome:/assembly/|extra=#class-select}}</div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Search&diff=392
Search
2020-07-02T15:10:42Z
<p>WikiSysop: </p>
<hr />
<div>{{#CouchDB_Query_field:tag=select|query=AND class:$1|values=,Gene,Event|id=class-select|default={{#urldecode:{{#urlget:type|}}}}}}<br />
{{#CouchDB_Query_table:type=couchdb-lucene-query|index=desc|db={{#getCouchDBinstance:}}|full=true|query=(id:$1* OR name:$1* OR desc:$1*)|text={{#urlget:query|}}|header=Id,Name,Type,Description,Coords,Length,Assembly|fields=#id,name,class,desc,coords,length,#genome|prefixcondurl=id:class@Gene=/gene/,id:class@Event=/event/|prefixurl=genome:/assembly/|extra=#class-select}}</div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Search&diff=391
Search
2020-07-02T15:10:13Z
<p>WikiSysop: </p>
<hr />
<div>{{#CouchDB_Query_field:tag=select|query=AND class:$1|values=,Gene,Event|id=class-select|default={{#urldecode:{{#urlget:type|}}}}}}<br />
{{#CouchDB_Query_table:type=couchdb-lucene-query|limit=|index=desc|db={{#getCouchDBinstance:}}|full=true|query=(id:$1* OR name:$1* OR desc:$1*)|text={{#urlget:query|}}|header=Id,Name,Type,Description,Coords,Length,Assembly|fields=#id,name,class,desc,coords,length,#genome|prefixcondurl=id:class@Gene=/gene/,id:class@Event=/event/|prefixurl=genome:/assembly/|extra=#class-select}}</div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Search&diff=390
Search
2020-07-02T14:59:35Z
<p>WikiSysop: </p>
<hr />
<div>{{#CouchDB_Query_field:tag=select|query=AND class:$1|values=,Gene,Event|id=class-select|default={{#urldecode:{{#urlget:type|}}}}}}<br />
{{#CouchDB_Query_table:type=couchdb-lucene-query|index=desc|db={{#getCouchDBinstance:}}|full=true|query=(id:$1* OR name:$1* OR desc:$1*)|text={{#urlget:query|}}|header=Id,Name,Type,Description,Coords,Length,Assembly|fields=#id,name,class,desc,coords,length,#genome|prefixcondurl=id:class@Gene=/gene/,id:class@Event=/event/|prefixurl=genome:/assembly/|extra=#class-select}}</div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Search&diff=389
Search
2020-07-02T14:58:45Z
<p>WikiSysop: </p>
<hr />
<div>{{#CouchDB_Query_field:tag=select|query=AND class:$1|values=,Gene,Event|id=class-select|default={{#urldecode:{{#urlget:type|}}}}}}<br />
{{#CouchDB_Query_table:type=couchdb-lucene-query|limit=10000|index=desc|db={{#getCouchDBinstance:}}|full=true|query=(id:$1* OR name:$1* OR desc:$1*)|text={{#urlget:query|}}|header=Id,Name,Type,Description,Coords,Length,Assembly|fields=#id,name,class,desc,coords,length,#genome|prefixcondurl=id:class@Gene=/gene/,id:class@Event=/event/|prefixurl=genome:/assembly/|extra=#class-select}}</div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Search&diff=388
Search
2020-07-02T13:49:44Z
<p>WikiSysop: </p>
<hr />
<div>{{#CouchDB_Query_field:tag=select|query=AND class:$1|values=,Gene,Event|id=class-select|default={{#urldecode:{{#urlget:type|}}}}}}<br />
{{#CouchDB_Query_table:type=couchdb-lucene-query|index=desc|db={{#getCouchDBinstance:}}|full=true|query=(id:$1* OR name:$1* OR desc:$1*)|text={{#urlget:query|}}|header=Id,Name,Type,Description,Coords,Length,Assembly|fields=#id,name,class,desc,coords,length,#genome|prefixcondurl=id:class@Gene=/gene/,id:class@Event=/event/|prefixurl=genome:/assembly/|extra=#class-select}}</div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Search&diff=387
Search
2020-07-02T13:49:16Z
<p>WikiSysop: </p>
<hr />
<div>{{#CouchDB_Query_field:tag=select|query=AND class:$1|values=,Gene,Event|id=class-select|default={{#urldecode:{{#urlget:type|}}}}}}<br />
{{#CouchDB_Query_table:type=couchdb-lucene-query|index=desc|db={{#getCouchDBinstance:}}|full=false|query=(id:$1* OR name:$1* OR desc:$1*)|text={{#urlget:query|}}|header=Id,Name,Type,Description,Coords,Length,Assembly|fields=#id,name,class,desc,coords,length,#genome|prefixcondurl=id:class@Gene=/gene/,id:class@Event=/event/|prefixurl=genome:/assembly/|extra=#class-select}}</div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Search&diff=386
Search
2020-07-02T13:44:26Z
<p>WikiSysop: </p>
<hr />
<div>{{#CouchDB_Query_field:tag=select|query=AND class:$1|values=,Gene,Event|id=class-select|default={{#urldecode:{{#urlget:type|}}}}}}<br />
{{#CouchDB_Query_table:type=couchdb-lucene-query|index=desc|db={{#getCouchDBinstance:}}|full=true|query=(id:$1* OR name:$1* OR desc:$1*)|text={{#urlget:query|}}|header=Id,Name,Type,Description,Coords,Length,Assembly|fields=#id,name,class,desc,coords,length,#genome|prefixcondurl=id:class@Gene=/gene/,id:class@Event=/event/|prefixurl=genome:/assembly/|extra=#class-select}}</div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Template:Tissues_List&diff=385
Template:Tissues List
2020-07-01T08:16:41Z
<p>WikiSysop: </p>
<hr />
<div><includeonly><div class="trow"><div>{{#showRcolor:{{{tissues_pastdb.Rcolor}}}}}&nbsp;<span class="title">{{#alink:href={{SERVER}}/tissue/{{{tissues_pastdb.SampleID}}}@{{{tissues_pastdb.Ass}}}|{{{tissues_pastdb.SampleID}}}}} </span></div><div> <span> {{{tissues_pastdb.Group}}}</span></div><div> <span>{{{tissues_pastdb.Subgroup}}}</span></div><div> <span>{{#alink:href={{SERVER}}/assembly/{{{tissues_pastdb.Ass}}}|{{{tissues_pastdb.Ass}}}}}</span> </div></div></includeonly></div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Template:Tissues_List&diff=384
Template:Tissues List
2020-07-01T08:15:54Z
<p>WikiSysop: </p>
<hr />
<div><includeonly><div class="trow"><div><span class="title">{{#alink:href={{SERVER}}/tissue/{{{tissues_pastdb.SampleID}}}@{{{tissues_pastdb.Ass}}}|{{{tissues_pastdb.SampleID}}}}} </span>{{#showRcolor:{{{tissues_pastdb.Rcolor}}}}}</div><div> <span> {{{tissues_pastdb.Group}}}</span></div><div> <span>{{{tissues_pastdb.Subgroup}}}</span></div><div> <span>{{#alink:href={{SERVER}}/assembly/{{{tissues_pastdb.Ass}}}|{{{tissues_pastdb.Ass}}}}}</span> </div></div></includeonly></div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Template:Tissues_List&diff=383
Template:Tissues List
2020-07-01T08:14:49Z
<p>WikiSysop: </p>
<hr />
<div><includeonly><div class="trow"><div><span class="title">{{#alink:href={{SERVER}}/tissue/{{{tissues_pastdb.SampleID}}}@{{{tissues_pastdb.Ass}}}|{{{tissues_pastdb.SampleID}}}}} </span>{{#showRcolor:{{{tissues_pastdb.Rcolor}}}}}</div><div> <span> {{{tissues_pastdb.Group}}}</span></div><div> <span>{{{tissues_pastdb.Subgroup}}}</span></div><div> <span>{{#alink:href={{SERVER}}/assembly/{{{tissues_pastdb.Ass}}}|{{{Ass}}}}}</span> </div></div></includeonly></div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Template:Tissues_List&diff=382
Template:Tissues List
2020-07-01T08:13:38Z
<p>WikiSysop: </p>
<hr />
<div><includeonly><div class="trow"><div><span class="title">{{#alink:href={{SERVER}}/tissue/{{{tissues_pastdb.SampleID}}}@{{{tissues_pastdb.Ass}}}|{{{tissues_pastdb.SampleID}}}}} </span>{{#showRcolor:{{{tissues_pastdb.Rcolor}}}}}</div><div> <span> {{{tissues_pastdb.Group}}}</span></div><div> <span>{{{tissues_pastdb.Subgroup}}}</span></div><div> <span>[{{SERVER}}/assembly/{{{tissues_pastdb.Ass}}} {{{Ass}}}]</span> </div></div></includeonly></div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Template:Tissues_List&diff=381
Template:Tissues List
2020-07-01T08:11:52Z
<p>WikiSysop: </p>
<hr />
<div><includeonly><div class="trow"><div><span class="title">[{{SERVER}}/tissue/{{{tissues_pastdb.SampleID}}}@{{{tissues_pastdb.Ass}}} {{{tissues_pastdb.SampleID}}}] </span>{{#showRcolor:{{{tissues_pastdb.Rcolor}}}}}</div><div> <span> {{{tissues_pastdb.Group}}}</span></div><div> <span>{{{tissues_pastdb.Subgroup}}}</span></div><div> <span>[{{SERVER}}/assembly/{{{tissues_pastdb.Ass}}} {{{Ass}}}]</span> </div></div></includeonly></div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Samples&diff=380
Samples
2020-07-01T08:10:54Z
<p>WikiSysop: </p>
<hr />
<div>{{#BioDB:tissues_pastdb|araTha10}}<br />
<div class="wikitable sortable multitable jquery-tablesorter"><br />
<div class="theader"><br />
<div class="trow"><br />
<div>Sample ID</div><div>Group</div><div>Subgroup</div><div>Assembly</div><br />
</div><br />
</div><br />
<nowiki/><br />
{{#BioDB_table_template:Template:Tissues_List}}</div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Samples&diff=379
Samples
2020-07-01T08:10:44Z
<p>WikiSysop: </p>
<hr />
<div>{{#BioDB:tissues_pastdb|araTha10}}<br />
<div class="wikitable sortable multitable jquery-tablesorter"><br />
<div class="theader"><br />
<div class="trow"><br />
<div>Sample ID</div><div>Group</div><div>Subgroup</div><div>Assembly</div><br />
</div><br />
</div><br />
<nowiki/><br />
{{#BioDB_table_template:Template:Tissues_List}}<br />
|}</div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Template:Tissues_List&diff=378
Template:Tissues List
2020-07-01T08:08:41Z
<p>WikiSysop: </p>
<hr />
<div><includeonly><div class="trow"><div><span class="title">[{{SERVER}}/tissue/{{{tissues_pastdb.SampleID}}}@{{{tissues_pastdb.Ass}}} {{{tissues_pastdb.SampleID}}}] </span>{{#showRcolor:{{{tissues_pastdb.Rcolor}}}}}</div><div> </div><div> <span> {{{tissues_pastdb.Group}}}</span></div><div> <span>{{{tissues_pastdb.Subgroup}}}</span></div><div> <span>[{{SERVER}}/assembly/{{{tissues_pastdb.Ass}}} {{{Ass}}}]</span> </div></div></includeonly></div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Samples&diff=376
Samples
2020-06-30T19:47:49Z
<p>WikiSysop: </p>
<hr />
<div>{{#BioDB:tissues_pastdb|araTha10}}<br />
{{Tissues_List_Header}}<br />
{{#BioDB_table_template:Template:Tissues_List}}<br />
|}</div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Template:Tissues_List&diff=375
Template:Tissues List
2020-06-30T19:47:28Z
<p>WikiSysop: </p>
<hr />
<div><includeonly><br />
{{!}}- <br />
{{!}} [{{SERVER}}/tissue/{{{tissues_pastdb.SampleID}}}@{{{tissues_pastdb.Ass}}} {{{tissues_pastdb.SampleID}}}] {{#showRcolor:{{{tissues_pastdb.Rcolor}}}}} {{!}}{{!}} {{{tissues_pastdb.Group}}} {{!}}{{!}} {{{tissues_pastdb.Subgroup}}} {{!}}{{!}} [{{SERVER}}/assembly/{{{tissues_pastdb.Ass}}} {{{Ass}}}]<br />
<br />
</includeonly></div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Samples&diff=374
Samples
2020-06-30T19:45:37Z
<p>WikiSysop: </p>
<hr />
<div>{{#BioDB:tissues_pastdb|araTha10}}<br />
{{Tissues_List_Header}}<br />
|-<br />
{{#BioDB_table_template:Template:Tissues_List}}<br />
<br />
|}</div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Samples&diff=373
Samples
2020-06-30T19:45:02Z
<p>WikiSysop: </p>
<hr />
<div>{{#BioDB:tissues_pastdb|araTha10}}<br />
{{Tissues_List_Header}}<br />
<br />
{{#BioDB_table_template:Template:Tissues_List}}<br />
<br />
|}</div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Template:Tissues_List&diff=372
Template:Tissues List
2020-06-30T19:44:37Z
<p>WikiSysop: </p>
<hr />
<div><includeonly><br />
|-<br />
| [{{SERVER}}/tissue/{{{tissues_pastdb.SampleID}}}@{{{tissues_pastdb.Ass}}} {{{tissues_pastdb.SampleID}}}] {{#showRcolor:{{{tissues_pastdb.Rcolor}}}}} || {{{tissues_pastdb.Group}}} || {{{tissues_pastdb.Subgroup}}} || [{{SERVER}}/assembly/{{{tissues_pastdb.Ass}}} {{{Ass}}}]<br />
<br />
</includeonly></div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Template:Tissues_List&diff=371
Template:Tissues List
2020-06-30T19:43:48Z
<p>WikiSysop: </p>
<hr />
<div><includeonly>|-<br />
| [{{SERVER}}/tissue/{{{tissues_pastdb.SampleID}}}@{{{tissues_pastdb.Ass}}} {{{tissues_pastdb.SampleID}}}] {{#showRcolor:{{{tissues_pastdb.Rcolor}}}}} || {{{tissues_pastdb.Group}}} || {{{tissues_pastdb.Subgroup}}} || [{{SERVER}}/assembly/{{{tissues_pastdb.Ass}}} {{{Ass}}}]<br />
<br />
</includeonly></div>
WikiSysop
http://pastdb.crg.eu/w/index.php?title=Samples&diff=370
Samples
2020-06-30T19:42:33Z
<p>WikiSysop: </p>
<hr />
<div>{{#BioDB:tissues_pastdb|araTha10}}<br />
{{Tissues_List_Header}}<br />
{{#BioDB_table_template:Template:Tissues_List}}<br />
|}</div>
WikiSysop