Difference between revisions of "Event2"
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</div> | </div> | ||
<div class="row"><div class="label small-6 large-4 columns">Protein Impact</div>{{BioDB_protimpact|{{#var:id|}}|{{#var:genome|}}}} | <div class="row"><div class="label small-6 large-4 columns">Protein Impact</div>{{BioDB_protimpact|{{#var:id|}}|{{#var:genome|}}}} | ||
| + | {{BioDB_protdisorder|{{#var:id|}}|{{#var:genome|}}}} | ||
<div class="content small-6 large-8 columns"> | <div class="content small-6 large-8 columns"> | ||
| − | + | <div class="">{{#var:protimpact|No protein impact description available}}{{HelpLinkedPage2|type=helpicon|msg=event-impact|output=data-tooltip}} | |
| − | {{PDBshow|{{#var:id|}}}} | + | {{PDBshow|{{#var:id|}}}}</div> |
| − | |||
<div class="block"> | <div class="block"> | ||
<div class="head"><span>Features</span> | <div class="head"><span>Features</span> | ||
<span class="unfold up"></span></div> | <span class="unfold up"></span></div> | ||
<div class="body"> | <div class="body"> | ||
| − | <div class="rowin"><div class="labelin">Disorder rate ( | + | <div class="rowin"><div class="labelin">Disorder rate (Iupred):</div><div class="contentin"> <span class="colorc1">C1</span>={{#var:c1dis|NA}} <span class="colora">A</span>={{#var:adis|NA}} <span class="colorc2">C2</span>={{#var:c2dis|NA}}</div> |
| − | </div> | + | </div>{{HelpLinkedPage2|type=helpicon|msg=event-disorder|output=data-tooltip}} |
| − | <div class="rowin"><div class="labelin">Domain overlap (PFAM):</div><div class="contentin"> | + | <div class="rowin"><div class="labelin">Domain overlap (PFAM):</div><div class="contentin">{{HelpLinkedPage2|type=helpicon|msg=event-pfam|output=data-tooltip}} |
<div class="block">{{BioDB_pfam|{{#var:id|}}|{{#var:genome|}}}} | <div class="block">{{BioDB_pfam|{{#var:id|}}|{{#var:genome|}}}} | ||
<div class="body"> | <div class="body"> | ||
| − | <div class="rowin"><div class="labelin">C1:</div><div class="contentin">{{#var:c1pfam|NA}}</div></div> | + | <div class="rowin"><div class="labelin colorc1">C1:</div><div class="contentin">{{#var:c1pfam|NA}}</div></div> |
| − | <div class="rowin"><div class="labelin">A:</div><div class="contentin">{{#var:apfam|NA}}</div></div> | + | <div class="rowin"><div class="labelin colora">A:</div><div class="contentin">{{#var:apfam|NA}}</div></div> |
| − | <div class="rowin"><div class="labelin">C2:</div><div class="contentin">{{#var:c2pfam|NA}}</div></div> | + | <div class="rowin"><div class="labelin colorc2">C2:</div><div class="contentin">{{#var:c2pfam|NA}}</div></div> |
</div> | </div> | ||
</div> | </div> | ||
| Line 72: | Line 72: | ||
<div class="rowin">{{#vardefine:isoid|{{#replace:{{#var:id}}|/|_}}}} | <div class="rowin">{{#vardefine:isoid|{{#replace:{{#var:id}}|/|_}}}} | ||
{{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Incl_main}} | {{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Incl_main}} | ||
| − | <div class="labelin">Main Inclusion Isoform:</div><div class="contentin">{{#var:isoformid}}</div> | + | <div class="labelin">Main Inclusion Isoform:</div><div class="contentin isoforms">{{#var:isoformid}}</div> |
</div> | </div> | ||
<div class="rowin"> | <div class="rowin"> | ||
| − | <div class="contentin domainimg">{{#ifeq:{{#vastDBFileExists:domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-INC.png}}|1|{{ExternalImgURL|{{SERVER}}/domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-INC.png|{{#var:isoid}}-INC}} | + | <div class="contentin domainimg">{{#ifeq:{{#vastDBFileExists:domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-INC.png}}|1|{{ExternalImgURL|{{SERVER}}/domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-INC.png|{{#var:isoid}}-INC}}}}</div> |
</div> | </div> | ||
<div class="rowin"> | <div class="rowin"> | ||
{{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Excl_main}} | {{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Excl_main}} | ||
| − | <div class=" | + | <div class="labelin">Main Skipping Isoform:</div><div class="contentin isoforms">{{#var:isoformid}}</div> |
</div> | </div> | ||
<div class="rowin"> | <div class="rowin"> | ||
| − | <div class="contentin domainimg">{{#ifeq:{{#vastDBFileExists:domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-EXC.png}}|1|{{ExternalImgURL|{{SERVER}}/domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-EXC.png|{{#var:isoid}}-EXC}} | + | <div class="contentin domainimg">{{#ifeq:{{#vastDBFileExists:domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-EXC.png}}|1|{{ExternalImgURL|{{SERVER}}/domain_plots/{{#var:genome}}/{{#var:sub}}/{{#var:isoid}}-EXC.png|{{#var:isoid}}-EXC}}}}</div> |
</div> | </div> | ||
<div class="rowin"> | <div class="rowin"> | ||
{{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Incl_other}} | {{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Incl_other}} | ||
| − | <div class="labelin">Other Inclusion Isoforms:</div><div class="contentin">{{#var:isoformid}}</div> | + | <div class="labelin">Other Inclusion Isoforms:</div><div class="contentin isoforms">{{#var:isoformid}}</div> |
</div> | </div> | ||
<div class="rowin"> | <div class="rowin"> | ||
{{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Excl_other}} | {{BioDB protein isoforms|{{#var:id}}|{{#var:genome}}|Excl_other}} | ||
| − | <div class="labelin">Other Skipping Isoforms:</div><div class="contentin">{{#var:isoformid}}</div> | + | <div class="labelin">Other Skipping Isoforms:</div><div class="contentin isoforms">{{#var:isoformid}}</div> |
</div></div></div></div></div> | </div></div></div></div></div> | ||
<div class="row"><div class="label small-6 large-4 columns">Associated events</div><div class="content small-6 large-8 columns">{{Associated2|{{#var:id|}}|{{#var:genome|}}}}{{HelpLinkedPage2|type=helpicon|msg=event-associated|output=data-tooltip}}</div> | <div class="row"><div class="label small-6 large-4 columns">Associated events</div><div class="content small-6 large-8 columns">{{Associated2|{{#var:id|}}|{{#var:genome|}}}}{{HelpLinkedPage2|type=helpicon|msg=event-associated|output=data-tooltip}}</div> | ||
| − | </div>{{Event Other Assemblies|{{#var:id|}}|{{#var:genome|}}}}{{BioDB primer|{{#var:id|}}|{{#var:genome|}}}} | + | </div>{{Event Other Assemblies|{{#var:id|}}|{{#var:genome|}}}} |
| + | <div class="row"><div class="label small-6 large-4">Conservation</div><div class="content small-6 large-8 columns">{{HelpLinkedPage2|type=helpicon|msg=event-conservation|output=data-tooltip}}{{ConservationFull2|{{#var:id|}}|{{#var:genome|}}}}</div> | ||
| + | </div>{{BioDB primer|{{#var:id|}}|{{#var:genome|}}}} | ||
<div class="row"><div class="label small-6 large-4 columns">Primers PCR</div> | <div class="row"><div class="label small-6 large-4 columns">Primers PCR</div> | ||
<div class="content small-6 large-8 columns"> | <div class="content small-6 large-8 columns"> | ||
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</div> | </div> | ||
<div class="row"> | <div class="row"> | ||
| − | <div class="label small-6 large-4 columns"> | + | <div class="label small-6 large-4 columns">Functional annotations<div class="submitfunction">[[EventFunction|(Submit an annotation)]]</div></div> |
<div class="content small-6 large-8 columns">{{AnnotatedFunction|{{#var:id|}}|{{#var:genome|}}}}</div> | <div class="content small-6 large-8 columns">{{AnnotatedFunction|{{#var:id|}}|{{#var:genome|}}}}</div> | ||
</div> | </div> | ||
| Line 121: | Line 123: | ||
<div class="tissuevalue-list sample-chart">{{HelpLinkedPage2|type=helpicon|msg=event-tissuevalue|output=data-tooltip}}</div>{{#printCharts:}} | <div class="tissuevalue-list sample-chart">{{HelpLinkedPage2|type=helpicon|msg=event-tissuevalue|output=data-tooltip}}</div>{{#printCharts:}} | ||
<hr> | <hr> | ||
| − | {{#specialImages:{{#var:id|}}|{{#var:genome|}}|AS_TCGA,AS_GTEX,AS_ASD_UCLA,AS_EARLY_DEV, | + | {{#specialImages:{{#var:id|}}|{{#var:genome|}}|AS_TCGA,AS_GTEX,AS_ASD_UCLA,AS_EARLY_DEV,AS_SCHEIFFELE,AS_NEU_DIF,AS_MYOBLAST,AS_SPERMATOG,AS_REPROGR_CARSTENS,AS_VICKY,AS_HEMATO_PREC,AS_PANCREAS,AS_ABIOTIC,AS_BIOTIC,AS_LIGHT,AS_SPL_FACTORS,AS_NEURAL_DIVERSITY,AS_NEUROGENESIS,AS_NEURONAL_ACT,AS_REGULATION_RBP_BRAIN,AS_REGULATION_RBP_SL2|The Cancer Genome Atlas (TCGA),Genotype-Tissue Expression Project (GTEx),Autistic and control brains,Pre-implantation embryo development,Ribosome-engaged transcriptomes of neuronal types,Neural differentiation time course,Muscular differentiation time course,Spermatogenesis cell types,Reprogramming of fibroblasts to iPSCs,Naive to Primed (Vicky),Hematopoietic precursors and cell types,Pancreas cell types,Abiotic stress,Biotic stress,Light response,Splicing factor regulation,Neural diversity,Neurogenesis,Neuronal activity,Splicing factor regulation (brain),Splicing factor regulation (SL2)|{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-tcga|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-gtex|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-asducla|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-earlydev|output=data-tooltip}},{{HelpLinkedPage|type=helpicon|msg=event-specialpsi-scheiffele|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-neudif|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-myoblast|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-spermatogenesis|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-reprogr_carstens|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-vicky|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-hemato|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-pancreas|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-abiotic|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-biotic|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-light|output=data-tooltip}},{{HelpLinkedPage2|type=helpicon|msg=event-specialpsi-spl_factors|output=data-tooltip}},{{HelpLinkedPage|type=helpicon|msg=event-specialpsi-neural_diversity|output=data-tooltip}},{{HelpLinkedPage|type=helpicon|msg=event-specialpsi-neurogenesis|output=data-tooltip}},{{HelpLinkedPage|type=helpicon|msg=event-specialpsi-neuronal_act|output=data-tooltip}},{{HelpLinkedPage|type=helpicon|msg=event-specialpsi-regulation_rbp_brain|output=data-tooltip}},{{HelpLinkedPage|type=helpicon|msg=event-specialpsi-regulation_rbp_sl2|output=data-tooltip}} |
| + | }} | ||
<!--{{SpecialPSIDiv}}--> | <!--{{SpecialPSIDiv}}--> | ||
{{Event Links|{{#var:genome}}|{{#var:gene_id}}|{{#var:gene_name}}}} | {{Event Links|{{#var:genome}}|{{#var:gene_id}}|{{#var:gene_name}}}} | ||
{{PDBdiv|{{#var:genome|}}}}[[Category:Events]][[Category:Events in Genome:{{#var:genome|}}]]<nowiki /></includeonly> | {{PDBdiv|{{#var:genome|}}}}[[Category:Events]][[Category:Events in Genome:{{#var:genome|}}]]<nowiki /></includeonly> | ||