Difference between revisions of "Downloads"
From PastDB
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From this page you can download tables with the information in PastDB. Tables with different features of the database can be downloaded separately: | From this page you can download tables with the information in PastDB. Tables with different features of the database can be downloaded separately: | ||
| − | ====Arabidopsis thaliana==== | + | |
| + | ====<i>Arabidopsis thaliana</i>==== | ||
=====AS events===== | =====AS events===== | ||
* [{{SERVER}}/downloads/araTha10/EVENT_INFO-araTha10.tab.gz EVENTS table] - Information about AS event coordinates and sequences. TAIR10 asssembly. | * [{{SERVER}}/downloads/araTha10/EVENT_INFO-araTha10.tab.gz EVENTS table] - Information about AS event coordinates and sequences. TAIR10 asssembly. | ||
Revision as of 13:40, 22 June 2020
From this page you can download tables with the information in PastDB. Tables with different features of the database can be downloaded separately:
Contents
Arabidopsis thaliana
AS events
- EVENTS table - Information about AS event coordinates and sequences. TAIR10 asssembly.
- PSI table - Inclusion patterns of AS events across tissues, cell types and developmental stages.
Event features
- SPLICE SITES table - Sequences and strength scores of 5' and 3' splice sites of alternative exons.
- PCR VALIDATION table - Suggested primer sequences and expected band lengths for validation of AS events by RT-PCR.
Protein impact
- PROTEIN IMPACT table - Effect of the AS event in the open reading frame of the transcript. Version v2.3.
- PROTEIN ISOFORMS - Mappings of events to ProteinIDs.
- DOMAINS table (PFAM) - Mappings to Pfam domains
- DOMAINS table (PROSITE) - Mappings to PROSITE domains.
- PROTEIN DISORDERED REGIONS table - Intrinsic disorder rates for A, C1 and C2 exons, using disopred3.
Genes
- GENES table - Information about gene names, descriptions, genomic coordinates and biotypes.
- EXPRESSION table - Gene expression across tissues, cell types and developmental stages. Measured in cRPKM and in raw reads.
- GENE-EVENTS table - Table relating genes to AS events.
Samples
- SAMPLE_INFO table - SRA identifiers and other information related to RNA-seq data used in this database.