Downloads

From this page you can download tables with the information in PastDB. Tables with different features of the database can be downloaded separately:

EVENTS table - Information about AS event coordinates and sequences. TAIR10 asssembly.
PSI table - Inclusion patterns of AS events across tissues, cell types and developmental stages (main PSI plot).
PSI table - Inclusion patterns of AS events in ABIOTIC stress experiments (special dataset).
PSI table - Inclusion patterns of AS events in BIOTIC stress experiments (special dataset).
PSI table - Inclusion patterns of AS events in LIGHT experiments (special dataset).
PSI table - Inclusion patterns of AS events upon SPLICING FACTOR disruption (special dataset).

SPLICE SITES table - Sequences and strength scores of 5' and 3' splice sites of alternative exons.
PCR VALIDATION table - Suggested primer sequences and expected band lengths for validation of AS events by RT-PCR.

PROTEIN IMPACT table - Effect of the AS event in the open reading frame of the transcript. Version v2.3.
PROTEIN ISOFORMS - Mappings of events to ProteinIDs.
DOMAINS table (PFAM) - Mappings to Pfam domains
DOMAINS table (PROSITE) - Mappings to PROSITE domains.
PROTEIN DISORDERED REGIONS table - Intrinsic disorder rates for A, C1 and C2 exons, using disopred3.

GENES table - Information about gene names, descriptions, genomic coordinates and biotypes.
EXPRESSION table - Gene expression across tissues, cell types and developmental stages. Measured in cRPKM and in raw reads (main GE plot).
PSI table - Gene expression in ABIOTIC stress experiments (special dataset).
PSI table - Gene expression in BIOTIC stress experiments (special dataset).
PSI table - Gene expression in LIGHT experiments (special dataset).
PSI table - Gene expression upon SPLICING FACTOR disruption (special dataset).
GENE-EVENTS table - Table relating genes to AS events.

SAMPLE_INFO table - SRA identifiers and other information related to RNA-seq data used in this database.

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