Difference between revisions of "Downloads"

From PastDB

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=====Genes=====
 
=====Genes=====
 
* [{{#var:server}}/downloads/araTha10/GENE_INFO-araTha10.tab.gz GENES table] - Information about gene names, descriptions, genomic coordinates and biotypes.
 
* [{{#var:server}}/downloads/araTha10/GENE_INFO-araTha10.tab.gz GENES table] - Information about gene names, descriptions, genomic coordinates and biotypes.
* [{{#var:server}}/downloads/araTha10/EXPRESSION_TABLE-araTha10.tab.gz EXPRESSION table] - Gene expression across tissues, cell types and developmental stages. Measured in cRPKM and in raw reads (main GE plot).
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* [{{#var:server}}/downloads/araTha10/EXPRESSION_TABLE-araTha10.tab.gz MAIN EXPRESSION table] - Gene expression across tissues, cell types and developmental stages. Measured in cRPKM and in raw reads (main GE plot).
 
* [{{#var:server}}/downloads/araTha10/cRPKM-araTha10-40-ABIOTIC-NORM.tab.gz ABIOTIC EXPRESSION table] - Gene expression in ABIOTIC stress experiments (special dataset).
 
* [{{#var:server}}/downloads/araTha10/cRPKM-araTha10-40-ABIOTIC-NORM.tab.gz ABIOTIC EXPRESSION table] - Gene expression in ABIOTIC stress experiments (special dataset).
 
* [{{#var:server}}/downloads/araTha10/cRPKM-araTha10-18-BIOTIC-NORM.tab.gz BIOTIC EXPRESSION table] - Gene expression in BIOTIC stress experiments (special dataset).
 
* [{{#var:server}}/downloads/araTha10/cRPKM-araTha10-18-BIOTIC-NORM.tab.gz BIOTIC EXPRESSION table] - Gene expression in BIOTIC stress experiments (special dataset).

Revision as of 09:43, 5 November 2020

From this page you can download tables with the information in PastDB. Tables with different features of the database can be downloaded separately:

Arabidopsis thaliana

AS events
  • EVENTS table - Information about AS event coordinates and sequences. TAIR10 asssembly.
  • MAIN PSI table - Inclusion patterns of AS events across tissues, cell types and developmental stages (main PSI plot).
  • ABIOTIC PSI table - Inclusion patterns of AS events in ABIOTIC stress experiments (special dataset).
  • BIOTIC PSI table - Inclusion patterns of AS events in BIOTIC stress experiments (special dataset).
  • LIGHT PSI table - Inclusion patterns of AS events in LIGHT experiments (special dataset).
  • SPL_FACTORS PSI table - Inclusion patterns of AS events upon SPLICING FACTOR disruption (special dataset).
Event features
  • SPLICE SITES table - Sequences and strength scores of 5' and 3' splice sites of alternative exons.
  • PCR VALIDATION table - Suggested primer sequences and expected band lengths for validation of AS events by RT-PCR.
Protein impact
Genes
Samples
  • SAMPLE_INFO table - SRA identifiers and other information related to RNA-seq data used in this database.