Downloads

From PastDB

Revision as of 13:39, 22 June 2020 by Mirimia (talk | contribs)

From this page you can download tables with the information in PastDB. Tables with different features of the database can be downloaded separately:

Arabidopsis thaliana

AS events
  • EVENTS table - Information about AS event coordinates and sequences. TAIR10 asssembly.
  • PSI table - Inclusion patterns of AS events across tissues, cell types and developmental stages.
Event features
  • SPLICE SITES table - Sequences and strength scores of 5' and 3' splice sites of alternative exons.
  • PCR VALIDATION table - Suggested primer sequences and expected band lengths for validation of AS events by RT-PCR.
Protein impact
Genes
  • GENES table - Information about gene names, descriptions, genomic coordinates and biotypes.
  • EXPRESSION table - Gene expression across tissues, cell types and developmental stages. Measured in cRPKM and in raw reads.
  • GENE-EVENTS table - Table relating genes to AS events.
Samples
  • SAMPLE_INFO table - SRA identifiers and other information related to RNA-seq data used in this database.