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Revision as of 17:56, 10 October 2022 by Mirimia (talk | contribs) (Protein impact)

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From this page you can download tables with the information in PastDB. Tables with different features of the database can be downloaded separately:

Arabidopsis thaliana

AS events
  • EVENT INFORMATION - Information about AS event coordinates and sequences. TAIR10 asssembly.
  • EVENT METRICS - Summary statistics for the usage of each AS event.
  • MAIN PSI TABLE - Inclusion patterns of AS events across tissues, cell types and developmental stages (main PSI plot).
  • ABIOTIC PSI TABLE - Inclusion patterns of AS events in ABIOTIC stress experiments (special dataset).
  • BIOTIC PSI TABLE - Inclusion patterns of AS events in BIOTIC stress experiments (special dataset).
  • LIGHT PSI TABLE - Inclusion patterns of AS events in LIGHT experiments (special dataset).
  • SPL_FACTORS PSI TABLE - Inclusion patterns of AS events upon SPLICING FACTOR disruption (special dataset).
Event features
  • SPLICE SITE INFORMATION - Sequences and strength scores of 5' and 3' splice sites of alternative exons.
  • PRIMER SUGGESTIONS - Suggested primer sequences and expected band lengths for validation of AS events by RT-PCR.
Protein impact
Genes
Samples
  • SAMPLE INFORMATION - SRA identifiers and other information related to RNA-seq data used in this database.
  • SAMPLE CONFIG PLOT - Config file with sample information used for the plot in the main panel.